PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G165700.1.p | ||||||||
Common Name | GLYMA_06G165700, Glyma06g17420.1, LOC100806696 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 350aa MW: 39333.9 Da PI: 7.2667 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.3 | 3.1e-09 | 174 | 221 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Glyma.06G165700.1.p 174 SHSLAERVRREKISERMKVLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 221 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.58E-17 | 168 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.20E-10 | 168 | 225 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 170 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.79 | 170 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-6 | 174 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-10 | 176 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MAAFSYQYHP FLVDPAFFPN NLNTPNSPPP PLPSQFQQLP HETSSFNVTN QETSCVDQSS 60 KITISDNEPS VTKNLSPQSS MVVDKLETGE QVTQKVNIPV DKKRRTRNGS SFTSNPQSKD 120 TATEGKNKKQ RKNNGGLKEE DKAKEEKKDQ RKCPEEPPTG YIHVRARRGQ ATDSHSLAER 180 VRREKISERM KVLQRLVPGC DKVTGKALML DEIINYVQSL QNQVEFLSMK LASVNPMFYD 240 LATDLDTLLV RPEKLNSMAS PSPLPSMSHC NSPNNQATTF ADTTTMTPTN IFHTTSDYLL 300 DNSVSFFLQG QRPNVLSEED TGSHFWDAED QRQKFLHPYG FSNNLCSFH* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.33388 | 0.0 | cotyledon| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G165700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031107 | 0.0 | KT031107.1 Glycine max clone HN_CCL_82 bHLH transcription factor (Glyma06g17420.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003526933.2 | 0.0 | transcription factor bHLH137 | ||||
Refseq | XP_028236742.1 | 0.0 | transcription factor bHLH137-like | ||||
Swissprot | Q93W88 | 2e-58 | BH137_ARATH; Transcription factor bHLH137 | ||||
TrEMBL | A0A0B2QWE0 | 0.0 | A0A0B2QWE0_GLYSO; Transcription factor bHLH137 | ||||
TrEMBL | I1KBY8 | 0.0 | I1KBY8_SOYBN; BHLH transcription factor | ||||
STRING | GLYMA06G17420.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4182 | 33 | 58 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 3e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G165700.1.p |
Entrez Gene | 100806696 |
Publications ? help Back to Top | |||
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