PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G157400.2.p

Common Name

GLYMA_06G157400

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 266aa MW: 30579.3 Da PI: 5.9806

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G157400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.1	1.3e-30	28	101	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ + ++ g+kk Lvfy g+apkg+kt+W+mheyrl Glyma.06G157400.2.p 28 YGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKAIGK--PKALGIKKALVFYAGKAPKGVKTNWIMHEYRL 101 3789**********************************98..778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.005	1	129	IPR003441	NAC domain
Pfam	PF02365	2.9E-16	2	101	IPR003441	NAC domain
SuperFamily	SSF101941	4.71E-37	27	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MGFRFVTATN CIVQLIDNEL DDAEIGYYGE KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA 60 TGADKAIGKP KALGIKKALV FYAGKAPKGV KTNWIMHEYR LANVDRSASK KNNNNLRLDD 120 WVLCRIYNKK GKIEKYNTTA PKMNLEMIHS FEHENETKPE IHKLGNEQLL YTETSDSVPR 180 LHTDSSSSEH VVSPDVRCER EVQSDPKWNN DDYDLGLQLE NAFDFQFNYL DDNNLSVDDD 240 PFGTVQYQMG QLSPLQDMFM YLQKM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-50	21	135	59	174	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.55396	0.0	cotyledon\| flower\| hypocotyl\| leaf\| meristem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G157400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX569046	0.0	JX569046.1 Glycine max NAC transcription factor (NAC018) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001242877.2	0.0	NAC transcription factor
Refseq	XP_028236488.1	0.0	NAC domain-containing protein 2-like
Swissprot	Q39013	6e-86	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A445KAB3	0.0	A0A445KAB3_GLYSO; NAC domain-containing protein 2 isoform B
TrEMBL	I1KBP6	0.0	I1KBP6_SOYBN; Uncharacterized protein
STRING	GLYMA06G16440.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	2e-88	NAC family protein

Link Out ? help Back to Top
Phytozome	Glyma.06G157400.2.p

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]