PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G157400.2.p
Common NameGLYMA_06G157400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 266aa    MW: 30579.3 Da    PI: 5.9806
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G157400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.11.3e-302810153128
                  NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ +   ++ g+kk Lvfy g+apkg+kt+W+mheyrl
  Glyma.06G157400.2.p  28 YGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKAIGK--PKALGIKKALVFYAGKAPKGVKTNWIMHEYRL 101
                          3789************************************98..778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.0051129IPR003441NAC domain
PfamPF023652.9E-162101IPR003441NAC domain
SuperFamilySSF1019414.71E-3727129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGFRFVTATN CIVQLIDNEL DDAEIGYYGE KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA  60
TGADKAIGKP KALGIKKALV FYAGKAPKGV KTNWIMHEYR LANVDRSASK KNNNNLRLDD  120
WVLCRIYNKK GKIEKYNTTA PKMNLEMIHS FEHENETKPE IHKLGNEQLL YTETSDSVPR  180
LHTDSSSSEH VVSPDVRCER EVQSDPKWNN DDYDLGLQLE NAFDFQFNYL DDNNLSVDDD  240
PFGTVQYQMG QLSPLQDMFM YLQKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-502113559174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.553960.0cotyledon| flower| hypocotyl| leaf| meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G157400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5690460.0JX569046.1 Glycine max NAC transcription factor (NAC018) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242877.20.0NAC transcription factor
RefseqXP_028236488.10.0NAC domain-containing protein 2-like
SwissprotQ390136e-86NAC2_ARATH; NAC domain-containing protein 2
TrEMBLA0A445KAB30.0A0A445KAB3_GLYSO; NAC domain-containing protein 2 isoform B
TrEMBLI1KBP60.0I1KBP6_SOYBN; Uncharacterized protein
STRINGGLYMA06G16440.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-88NAC family protein
Publications ? help Back to Top
  1. Florentin A,Damri M,Grafi G
    Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization.
    Dev. Dyn., 2013. 242(10): p. 1121-33
    [PMID:23798027]
  2. Jensen MK, et al.
    ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana.
    FEBS Open Bio, 2013. 3: p. 321-7
    [PMID:23951554]
  3. Wang YX
    Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress.
    Mol. Biol. Rep., 2013. 40(11): p. 6451-8
    [PMID:24057250]
  4. Yang X, et al.
    Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis.
    Plant Cell Rep., 2015. 34(6): p. 943-58
    [PMID:25666276]
  5. Du Q,Wang H
    The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation.
    Plant Signal Behav, 2015. 10(10): p. e1078955
    [PMID:26340415]
  6. Takasaki H, et al.
    SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
    Plant J., 2015. 84(6): p. 1114-23
    [PMID:26518251]
  7. Liu Y,Sun J,Wu Y
    Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice.
    J. Plant Res., 2016. 129(5): p. 955-962
    [PMID:27216423]
  8. Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR
    Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining.
    PLoS ONE, 2016. 11(9): p. e0162327
    [PMID:27618630]
  9. Zhao J,Missihoun TD,Bartels D
    The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana.
    Planta, 2018. 248(4): p. 1017-1027
    [PMID:30027414]