 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Glyma.06G149900.1.p |
| Common Name | GLYMA_06G149900, LOC100805632 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
Trihelix |
| Protein Properties |
Length: 498aa MW: 56523.9 Da PI: 6.9569 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.06G149900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 90.2 | 2.3e-28 | 42 | 127 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+++e++aL+++r+em+ ++++++ k+plWe+vs+k++e g++rs+k+Ckek+en+ k+++++keg+ ++ s+ +t+++f+qlea
Glyma.06G149900.1.p 42 RWPREETMALLKIRSEMDVAFKDANPKAPLWEQVSRKLAELGYNRSAKKCKEKFENVYKYHRRTKEGRFGK-SNGAKTYRFFEQLEA 127
8********************************************************************97.67778********85 PP
|
| 2 | trihelix | 95.2 | 6.1e-30 | 324 | 415 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84
rW+k+ev aLi++r+e + + + ++ +k+plWee+s +m++ g+ rs+k+Ckekwen+nk++k+ike +k++ +++s+tcpy+++
Glyma.06G149900.1.p 324 RWPKDEVEALIRLRTEFDVQAQGNNnnsnngSKGPLWEEISLAMKSIGYDRSAKRCKEKWENINKYFKRIKEKNKRK-PQDSKTCPYYHH 412
8**************8888887543345556********************************************96.9*********** PP
trihelix 85 lea 87
lea
Glyma.06G149900.1.p 413 LEA 415
985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 498 aa
Download sequence Send
to blast |
MLEISTLPET ATENADGGSA AVSDGSKAEH SEDGDRNSAA NRWPREETMA LLKIRSEMDV 60
AFKDANPKAP LWEQVSRKLA ELGYNRSAKK CKEKFENVYK YHRRTKEGRF GKSNGAKTYR 120
FFEQLEALDG NHSLPPPTTT TDNNNNVDDD DVILNAVPCS VIAAAAHEHS SSTTSSSGKM 180
KRKLTRFLEG LMREVIEKQE TLQRKFMEVL DKCEKDRMAR EEAWKKEELE RIKKERELLA 240
HERSIAAAKD EAVLAFLKKF AEAEGTVQLL EKIQVQNDKQ KNKHQNGANA NRGGDVTVVT 300
DMDKQECGNN GVSVGNFVHM SSSRWPKDEV EALIRLRTEF DVQAQGNNNN SNNGSKGPLW 360
EEISLAMKSI GYDRSAKRCK EKWENINKYF KRIKEKNKRK PQDSKTCPYY HHLEALYSKK 420
PKKVVDHGNE LKPEELLMHI MESQSQEQQQ EMQTQTQSSS EDAERDQDQN QDQSGYQNQM 480
VDNNNNNNSP SSIAIMS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EF221753 | 0.0 | EF221753.1 Glycine max trihelix transcription factor (GT-2A) mRNA, complete cds. |
