PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G142600.1.p
Common NameGLYMA_06G142600, LOC102668197
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 277aa    MW: 30277.6 Da    PI: 7.5765
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G142600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-056890123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C++ Fs++  L  H++ H
  Glyma.06G142600.1.p 68 FSCNYCKREFSTSQALGGHQNAH 90
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.29E-66595No hitNo description
Gene3DG3DSA:3.30.160.601.5E-46594IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.7186895IPR007087Zinc finger, C2H2
PfamPF139124.0E-66892IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MKISKKKGLK PEQQEKASNS NKEEVIDFME LSNKAQEQEQ PSSKVVDSPL CDSKGADDEN  60
TKLEAKTFSC NYCKREFSTS QALGGHQNAH KQERALAKRR QGFDVGGFGH FPYYPYPSFY  120
NSNSLYGGSF NRALGVRNDS MIHKLPWTPR YDHSWLKQQD HVPMPNSSIF DGFGIVKGCY  180
PIIKSDGTLS LRQENGNAND GTLSLFPNAA ANSTSQLVNN GGNANDGTLS LFANAATNSS  240
SLLGNREILA TKIDDHSMPE ETSKAASANL DLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G142600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006582511.10.0zinc finger protein 4
RefseqXP_028234401.10.0zinc finger protein 4-like
TrEMBLA0A0B2R1920.0A0A0B2R192_GLYSO; Zinc finger protein 3
TrEMBLK7KV120.0K7KV12_SOYBN; Uncharacterized protein
STRINGGLYMA06G14783.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.12e-16C2H2 family protein