PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G142100.1.p
Common NameGLYMA_06G142100, LOC100786198
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 332aa    MW: 37140.4 Da    PI: 5.8807
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G142100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.9e-30174234259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqKe+ gs+fprsYYrCt++   +C++kk+v+r +++p+++e+tY+g+H+++
  Glyma.06G142100.1.p 174 EDGFTWRKYGQKEILGSKFPRSYYRCTHQklyECQAKKQVQRLDQNPNIFEVTYRGDHTCH 234
                          7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-28168235IPR003657WRKY domain
SuperFamilySSF1182909.68E-26170235IPR003657WRKY domain
SMARTSM007741.2E-38173235IPR003657WRKY domain
PfamPF031065.4E-27174234IPR003657WRKY domain
PROSITE profilePS5081120.208174236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MMEEVINSIR RACVLAQNLE QDLPNLANQP AMMSLSIDQI TEAFSGAKEK MLQFSRQNQT  60
SDESPPTLVH ETTQLQPQMD ATLMQEWLRS SHALTMDQLF QMHQFHAARS TLQIGEMGGR  120
DGEDNFERNK GPEEMQGINE SSSRPRRRSR EANQEKRKVM VPAPQFGNTE MPPEDGFTWR  180
KYGQKEILGS KFPRSYYRCT HQKLYECQAK KQVQRLDQNP NIFEVTYRGD HTCHMSSTAL  240
SSVPLQQLLV DITQNNSNTI SSQLSPTMNL SLHPGGGSGT AASSGGASAS RFGGDYPVVD  300
MADAMFNSRS SSNNSMEFLF SPEDKSDPKI E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-18174233968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G142100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150355e-45AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528014.10.0WRKY transcription factor 55 isoform X1
RefseqXP_028236288.10.0WRKY transcription factor 55-like isoform X1
TrEMBLA0A445K9J40.0A0A445K9J4_GLYSO; WRKY transcription factor 55
TrEMBLK7KV100.0K7KV10_SOYBN; Uncharacterized protein
STRINGGLYMA06G14731.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-50WRKY DNA-binding protein 55