PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G138100.1.p | ||||||||
Common Name | GLYMA_06G138100, LOC100808469 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 599aa MW: 67097 Da PI: 5.9455 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.6 | 2.1e-52 | 22 | 148 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lp GfrF+Ptdeelv++yL++k++g+ ++ vi+e+d++k+ePwd+p + v++++ ew+fF+++d+ky++g+r nrat++gyWkatgk Glyma.06G138100.1.p 22 LPLGFRFRPTDEELVNYYLRQKINGNGRQV-WVIREIDVCKWEPWDMPglSVVQTKDPEWFFFCPQDRKYPNGHRLNRATNNGYWKATGK 110 699************************999.89***************6447788888******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 d++++s ++ l+g+kktLvfy+grapkg++t+Wvmheyr Glyma.06G138100.1.p 111 DRRIKS-GKDLIGMKKTLVFYTGRAPKGNRTNWVMHEYR 148 ******.999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-60 | 17 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.2 | 22 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-28 | 23 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 599 aa Download sequence Send to blast |
MGSVDCYPSR TDDAAVVSLD SLPLGFRFRP TDEELVNYYL RQKINGNGRQ VWVIREIDVC 60 KWEPWDMPGL SVVQTKDPEW FFFCPQDRKY PNGHRLNRAT NNGYWKATGK DRRIKSGKDL 120 IGMKKTLVFY TGRAPKGNRT NWVMHEYRPT LKELDGTNPG QNPYVLCRLF KKHDESLEVS 180 HCDEAEQTAS TPVAYSTEEI QSDLAVVAGS PSQVTEDDKH QAMIPAHSEE AISNVVTPVV 240 CRSDRYDACH APNQIVLPTA EEFQPLNYYD PRNELLDDKL FSPVLAHIQP EFHYQANIES 300 DDWYGLQYGT NETNMSDFLN SVVNWDQVSF EDLNCQQQSY PLFNVKDSVL SSDLDSELAI 360 MTCMHAGSAE GPNNGRKPLV ITSEFRSTTG IPVDCGGDEQ KSNVGLFQNN SQRAFTDVNI 420 GQVYNVVDDY EQRGIYSAVA SGNTGIIRRH REVQNEQLSS NSTQGTAQRR IRLSMATHGS 480 NKMVKSGSCA QEELNLKSVI AMEEKASESH ISDESSTLTN DGNELPKTSK SSGKRKISRQ 540 ATKAGSTLGL KDFLLLRRVP YISKASSNRA KCSSVFVVSA FVMVTLVVFT DIWGYLKF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-45 | 21 | 175 | 14 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.17786 | 0.0 | cotyledon| leaf| meristem| pod| seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G138100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098432 | 0.0 | BT098432.1 Soybean clone JCVI-FLGm-23K19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003526771.1 | 0.0 | NAC domain-containing protein 91 | ||||
TrEMBL | A0A0R4J3F6 | 0.0 | A0A0R4J3F6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G14290.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5551 | 33 | 53 | Representative plant | OGRP9409 | 6 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 6e-96 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G138100.1.p |
Entrez Gene | 100808469 |