PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G134600.2.p
Common NameGLYMA_06G134600, LOC100796948
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 578aa    MW: 62054.8 Da    PI: 8.8406
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G134600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.5e-25198241144
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          d+epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e
  Glyma.06G134600.2.p 198 DPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVE 241
                          79***************************************998 PP
2QLQ54.14.7e-19146178234
                  QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 
                          +FT aQ+ +L++Q+++yKy++a++PvP++Ll +
  Glyma.06G134600.2.p 146 PFTSAQWRELERQAMIYKYMMASVPVPHDLLTP 178
                          8*****************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.4E-11145181IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.7E-13146177IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.567146181IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.739198242IPR014977WRC domain
PfamPF088792.0E-20199241IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MGELFGVGKR RNISSSNNNN NSSSSSVLGL DVKVQQSPEA LFHNRMMMMA HHNHHHRPLS  60
SPFDNNGDGD GPTTYMSFTN HINLVSGASS VLGPAIDAGC GAAPPAPVRT LQPFDISSYT  120
SSPTTTTTTF NFKPPSGVMA ASLGFPFTSA QWRELERQAM IYKYMMASVP VPHDLLTPSS  180
RSSCMDGGFN LRLANSTDPE PGRCRRTDGK KWRCSRDVAP NHKYCERHMH RGRPRSRKPV  240
EVNTNSTTTP TSVNNNNHQI KKARHECNNN PFATPDVTAA ISNPTSRKNG SSPHFLGSTT  300
TQPYLDSSLS LDNFGLKAAS FDSVASVSAN KEPRGLEWML NGDPISLGAS DSQWQSLMHN  360
KDGMTSVSSC NTTESQYLNS LALYNSGLEQ QNRRHPLFLN PLVVPMENLQ PEKPRGFIDA  420
WSNAESNANT NTTNKNSAAS IGKLSLSSLD LSMGGAAVNE DVGNVNMGLG LMEPNGKTHT  480
GTKISLSNWQ NPAPWVASSL GGPLAEVLRS STVTATTTTN EATSNTPSPA TTTHAESPSG  540
VLQKTLVSLS DSSNNSSPRV ASSRANSEMA LLRFQSN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.82630.0cotyledon| leaf| meristem| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G134600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581672.10.0growth-regulating factor 7 isoform X2
TrEMBLI1KAZ70.0I1KAZ7_SOYBN; Uncharacterized protein
STRINGGLYMA06G13960.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.15e-39growth-regulating factor 7