PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G131500.2.p | ||||||||
Common Name | GLYMA_06G131500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 190aa MW: 21148.2 Da PI: 10.017 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.9 | 6.1e-40 | 21 | 80 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s Glyma.06G131500.2.p 21 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRS 80 7899******************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-30 | 17 | 79 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.8E-34 | 22 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.264 | 25 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 27 | 63 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MEGGSKPPPP PMLERRARPQ KDQALNCPRC NSTNTKFCYY NNYSLSQPRY FCKTCRRYWT 60 EGGSLRNVPV GGGSRKNKRS TPSAPPPSSA SAQAKKLPDL TTPNFPQSAS QDPKIHQGQD 120 LNLAYPPAED YNTVSMSKLI EVPYNTELTR VAFIKTLLPH QHQHLHLLTI SCLPWSFSRL 180 GLLLLPQGV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28679 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269|PubMed:20563990}. | |||||
Uniprot | TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269|PubMed:20563990}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G131500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ857272 | 0.0 | DQ857272.1 Glycine max Dof28 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001236794.1 | 1e-105 | Dof21b | ||||
Refseq | XP_028236145.1 | 1e-105 | dof zinc finger protein DOF2.5-like isoform X1 | ||||
Refseq | XP_028236146.1 | 1e-105 | dof zinc finger protein DOF2.5-like isoform X2 | ||||
Refseq | XP_028236147.1 | 1e-105 | dof zinc finger protein DOF2.5-like isoform X2 | ||||
Swissprot | Q8LAP8 | 1e-41 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | K7KUU3 | 1e-137 | K7KUU3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G13671.1 | 1e-138 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 7e-42 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G131500.2.p |
Publications ? help Back to Top | |||
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