PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G120200.2.p
Common NameGLYMA_06G120200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 377aa    MW: 41390.4 Da    PI: 4.823
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G120200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.6e-1096135344
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                           WT+ E +ll++ v ++G + W+++a+ ++ ++t  +c+s++
  Glyma.06G120200.2.p  96 VWTEAETLLLLESVLKHGDD-WELVAQSVQ-TKTKLDCISKL 135
                          6*****************88.*********.*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-687132IPR009057Homeodomain-like
PROSITE profilePS5129317.72492143IPR017884SANT domain
SuperFamilySSF466895.91E-992147IPR009057Homeodomain-like
SMARTSM007175.9E-793141IPR001005SANT/Myb domain
PfamPF002499.0E-1096135IPR001005SANT/Myb domain
CDDcd001671.48E-697134No hitNo description
PfamPF164957.1E-21285360IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MLLPRNGKSG VNASGASLKL PPLASYSDVY GDLIRQKEGN CGLCGHKCGS GHYRCTQDNF  60
IICINCFKSG NYGEKRSTED FVLSESSENS GKHDTVWTEA ETLLLLESVL KHGDDWELVA  120
QSVQTKTKLD CISKLIELPF GELMLGPAHR NVNINDANGI VNNAKQVQSS SSDNQEISKT  180
KDQSPEFTNE NEQNGDAVKE SPSKRQRVAS LSDSSSSLMN QVGLISNVVD PHITAAAADA  240
AVSALCDEDL CPREIFDVDG EEGLEMERSS LSEIPLTLRV RAATATALGA AAARAKLLAD  300
QEDREIEHLV ATIIEAQIDK MLQKVKHFDD LELLMEKEHA EMENKKDSIL TERIDVLRRT  360
FRSGVTRWKD YSYVKS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.157450.0cotyledon| hypocotyl| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G120200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-172AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527961.20.0SWI/SNF complex subunit SWI3A
RefseqXP_028235966.10.0SWI/SNF complex subunit SWI3A-like
TrEMBLK7KUL70.0K7KUL7_SOYBN; Uncharacterized protein
STRINGGLYMA06G12600.10.0(Glycine max)