PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G117600.1.p
Common NameGLYMA_06G117600, LOC100306010
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 182aa    MW: 20970.1 Da    PI: 9.3119
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G117600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.84e-30959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien+snrqvt+skR+ngilKKA+E+SvLCda+v++iif+ +gk++ey+s
  Glyma.06G117600.1.p  9 KRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGVSGKMHEYIS 59
                         79***********************************************86 PP
2K-box87.92e-2971168198
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          yq++sgk l++ak+e+l++e+++Lkke++++q e+Rhl+Ged++sL++keL+ Le++Le++l+ +R+kK+e+ ++  ++ +  e++++e 
  Glyma.06G117600.1.p  71 YQRASGKTLWDAKHENLSNEIDRLKKENDSMQIELRHLKGEDITSLNYKELMALEDALENGLSGVREKKMEVHRMFKRNGKILEEQNKEL 160
                          78999*********************************************************************************9999 PP

                K-box  91 nkaLrkkl 98 
                             L++ l
  Glyma.06G117600.1.p 161 SFLLQQHL 168
                          99999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.258161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-35296IPR002100Transcription factor, MADS-box
CDDcd002657.31E-38280No hitNo description
PRINTSPR004045.0E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.8E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-2082161IPR002487Transcription factor, K-box
PROSITE profilePS5129714.67684170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEISVLCD AQVSLIIFGV SGKMHEYISP  60
YTTLIDVLDR YQRASGKTLW DAKHENLSNE IDRLKKENDS MQIELRHLKG EDITSLNYKE  120
LMALEDALEN GLSGVREKKM EVHRMFKRNG KILEEQNKEL SFLLQQHLAV EGIGNMHEQW  180
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-18191183MEF2 CHIMERA
6bz1_B1e-18191183MEF2 CHIMERA
6bz1_C1e-18191183MEF2 CHIMERA
6bz1_D1e-18191183MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.374220.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G117600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0899010.0BT089901.1 Soybean clone JCVI-FLGm-3I15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236242.11e-130uncharacterized protein LOC100306010
RefseqXP_028234190.11e-130floral homeotic protein PMADS 2-like
SwissprotQ0HA259e-91MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A445K8991e-129A0A445K899_GLYSO; Floral homeotic protein GLOBOSA isoform A
TrEMBLC6SXK61e-129C6SXK6_SOYBN; Uncharacterized protein
STRINGGLYMA06G12380.11e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Representative plantOGRP53021222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-75MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]