PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G114000.1.p
Common NameGLYMA_06G114000, Glyma06g11970.1
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 300aa    MW: 34049.6 Da    PI: 6.6738
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G114000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.97e-5271311128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelv +yL++k++++++ +  +i+e+d+yk++PwdLp  ++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk
  Glyma.06G114000.1.p   7 LPPGFRFHPTDEELVLHYLCRKCASQPIAV-PIIAEIDLYKYDPWDLPGLATYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADK 95 
                          79**************************99.88***************7667789*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++ +   + vg+kk Lvfy g+apkg k++W+mheyrl
  Glyma.06G114000.1.p  96 PIGQ--PKPVGIKKALVFYAGKAPKGDKSNWIMHEYRL 131
                          **98..789***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-623157IPR003441NAC domain
PROSITE profilePS5100560.5757157IPR003441NAC domain
PfamPF023653.7E-278131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MASELELPPG FRFHPTDEEL VLHYLCRKCA SQPIAVPIIA EIDLYKYDPW DLPGLATYGE  60
KEWYFFSPRD RKYPNGSRPN RAAGTGYWKA TGADKPIGQP KPVGIKKALV FYAGKAPKGD  120
KSNWIMHEYR LADVDRSVRK KNTLRLDDWV LCRIYNKKGT IEKLQPSSDV AHSRNIESSE  180
IEDRKPEILK SGGGCLPPPV PVPAPPQATA KTDYMYFDPS DSIPKLHTDS SCSEQVVSPE  240
FASEVQSEPK WNEWEKSLEF PFNYVDATLN NSFMAQFQGN NQMLSPLQDM FMYWPNKSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-79316311174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.17500.0flower| hypocotyl| leaf| pod| root| seed coat| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G114000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312110.0KT031211.1 Glycine max clone HN_CCL_60 NAC transcription factor (Glyma06g11970.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236871.20.0NAC domain protein NAC2
RefseqXP_028235892.10.0NAC domain-containing protein 2-like
SwissprotQ390131e-146NAC2_ARATH; NAC domain-containing protein 2
TrEMBLA0A445K8360.0A0A445K836_GLYSO; NAC domain-containing protein 2
TrEMBLI1KAA60.0I1KAA6_SOYBN; NAC transcription factor
STRINGGLYMA06G11970.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125834108
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-145NAC family protein
Publications ? help Back to Top
  1. Florentin A,Damri M,Grafi G
    Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization.
    Dev. Dyn., 2013. 242(10): p. 1121-33
    [PMID:23798027]
  2. Jensen MK, et al.
    ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana.
    FEBS Open Bio, 2013. 3: p. 321-7
    [PMID:23951554]
  3. Wang YX
    Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress.
    Mol. Biol. Rep., 2013. 40(11): p. 6451-8
    [PMID:24057250]
  4. Yang X, et al.
    Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis.
    Plant Cell Rep., 2015. 34(6): p. 943-58
    [PMID:25666276]
  5. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  6. Du Q,Wang H
    The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation.
    Plant Signal Behav, 2015. 10(10): p. e1078955
    [PMID:26340415]
  7. Takasaki H, et al.
    SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
    Plant J., 2015. 84(6): p. 1114-23
    [PMID:26518251]
  8. Liu Y,Sun J,Wu Y
    Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice.
    J. Plant Res., 2016. 129(5): p. 955-962
    [PMID:27216423]
  9. Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR
    Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining.
    PLoS ONE, 2016. 11(9): p. e0162327
    [PMID:27618630]
  10. Zhao J,Missihoun TD,Bartels D
    The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana.
    Planta, 2018. 248(4): p. 1017-1027
    [PMID:30027414]