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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G111300.1.p | ||||||||
Common Name | AP2-5, GLYMA_06G111300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 25028 Da PI: 6.7653 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 32 | 82 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv+eIr p ++++r++lg++ t+e Aa+a++aa ++l+g Glyma.06G111300.1.p 32 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 82 59*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.99E-21 | 32 | 92 | No hit | No description |
SMART | SM00380 | 8.2E-36 | 33 | 96 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-11 | 33 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-20 | 33 | 92 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-30 | 33 | 91 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.694 | 33 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MVKSEHKIKT EPSSKAMRLS SPSSSTSDCK KKKYKGVRMR SWGSWVSEIR APNQKTRIWL 60 GSYSTPEAAA RAYDAALLCL KGSSANLNFP LSSSQQYIPG DAVMSPKSIQ RVAAAAANSF 120 IDNATTPPSP PPASTPSSSS LASSPSLVSS PSDQIDDDAL LISSFQAYTS CGQANQSMAV 180 NVMEPWYTFG DGLQSPKYAD QMLSGDFFHV DSSHLLDDLY EESDIRLWSF C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-14 | 30 | 91 | 2 | 64 | ATERF1 |
3gcc_A | 1e-14 | 30 | 91 | 2 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.53078 | 0.0 | epicotyl |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G111300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ228457 | 0.0 | FJ228457.1 Glycine max AP2 domain-containing transcription factor 5 (AP2-5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001239936.1 | 1e-169 | AP2 domain-containing transcription factor 5 | ||||
Refseq | XP_028235857.1 | 1e-169 | ethylene-responsive transcription factor ERF014-like | ||||
TrEMBL | A0A0B2PNB2 | 1e-168 | A0A0B2PNB2_GLYSO; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | C9WA63 | 1e-168 | C9WA63_SOYBN; AP2 domain-containing transcription factor 5 | ||||
STRING | GLYMA06G11700.1 | 1e-168 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4798 | 31 | 56 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 2e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G111300.1.p |
Entrez Gene | 100819512 |