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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.06G103300.1.p |
Common Name | GLYMA_06G103300, LOC100811162 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MYB |
Protein Properties |
Length: 340aa MW: 37568.2 Da PI: 6.8277 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.06G103300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 60 | 5.1e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++lv+ ++++G g+W++ ++ g++R++k+c++rw +yl
Glyma.06G103300.1.p 14 KGPWTPEEDQKLVQHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
79********************************************97 PP
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2 | Myb_DNA-binding | 55.2 | 1.7e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++++eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l
Glyma.06G103300.1.p 67 RGKFSQEEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
89********************.*********.************996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MGRSPCCDEN GLKKGPWTPE EDQKLVQHIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQEEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHQPRT DLVSTLPYLL ALANMTDLMD HQTLDEHAVR LQAEAVHLAK LQYLHYLIRS 180 SNSLSTNKSY DQSATTNMEP AAFSLLNSIS NVKENPVMLQ PADDTPAASL SHGIVSSQPL 240 HHPNVLPHHL LEPQVSFSSQ SCLNSEIGQG TNFAIISQGD HTLDLDSSWI IPSITPPNAI 300 GTSANNPGDA SSSTSSYGGG PSSYWSELLF EDPILHELS*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |