 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Glyma.06G098000.1.p |
| Common Name | GLYMA_06G098000 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
GATA |
| Protein Properties |
Length: 352aa MW: 38082.6 Da PI: 4.4331 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.06G098000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 49.2 | 7e-16 | 201 | 237 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+
Glyma.06G098000.1.p 201 CHHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 237
*******99*************************997 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding |
| GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| GO:0003682 | Molecular Function | chromatin binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MATVNPQPLQ FEDPAIPVDD DDDDDDGGDD DAMDDLEDAN VNSVNVAANA AASVNHEAVV 60
AMPSRTSELT LSFEGEVYVF PAITPQKVQA VLLLLGGRDV QARVPAVEQP FDQSNRGMGD 120
TPKRSNLSRR IASLVRFREK RKERCFDKKI RYSVRKEVAQ RMHRKNGQFA SLKESPGSSN 180
WDSAQSSGQD GTSHSESVRR CHHCGVSENN TPAMRRGPAG PRTLCNACGL MWANKGTLRD 240
LSKGGRNLSV EQSDLDTPID VKPTSVLEGE LPGIHDEQDS SEDPSKSNAA DGSSNHAVNP 300
SDEELPETAE HFTNVLPLGI GHSSTNENEQ EPLVELSNPS DTDIDIPGNF D*
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Gma.3859 | 0.0 | cotyledon| hypocotyl| leaf| meristem| root| seed coat |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
