PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G098000.1.p
Common NameGLYMA_06G098000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 352aa    MW: 38082.6 Da    PI: 4.4331
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G098000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.27e-16201237135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Glyma.06G098000.1.p 201 CHHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 237
                          *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.6466297IPR010399Tify domain
SMARTSM009791.0E-66297IPR010399Tify domain
PfamPF062004.1E-96596IPR010399Tify domain
PROSITE profilePS5101712.719130172IPR010402CCT domain
PfamPF062037.0E-15130171IPR010402CCT domain
PROSITE profilePS501148.629195254IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-10195248IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-11196245No hitNo description
Gene3DG3DSA:3.30.50.108.4E-15199242IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.16E-16200244No hitNo description
PROSITE patternPS003440201228IPR000679Zinc finger, GATA-type
PfamPF003208.0E-14201237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MATVNPQPLQ FEDPAIPVDD DDDDDDGGDD DAMDDLEDAN VNSVNVAANA AASVNHEAVV  60
AMPSRTSELT LSFEGEVYVF PAITPQKVQA VLLLLGGRDV QARVPAVEQP FDQSNRGMGD  120
TPKRSNLSRR IASLVRFREK RKERCFDKKI RYSVRKEVAQ RMHRKNGQFA SLKESPGSSN  180
WDSAQSSGQD GTSHSESVRR CHHCGVSENN TPAMRRGPAG PRTLCNACGL MWANKGTLRD  240
LSKGGRNLSV EQSDLDTPID VKPTSVLEGE LPGIHDEQDS SEDPSKSNAA DGSSNHAVNP  300
SDEELPETAE HFTNVLPLGI GHSSTNENEQ EPLVELSNPS DTDIDIPGNF D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124DTPKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.38590.0cotyledon| hypocotyl| leaf| meristem| root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G098000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0934500.0BT093450.1 Soybean clone JCVI-FLGm-17E18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242386.10.0uncharacterized protein LOC100784257
RefseqXP_028235682.10.0GATA transcription factor 24-like
SwissprotQ8GXL77e-70GAT24_ARATH; GATA transcription factor 24
TrEMBLI1K9S60.0I1K9S6_SOYBN; Uncharacterized protein
STRINGGLYMA06G10290.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-71ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]