PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GATA

Protein Properties

Length: 305aa MW: 33441.5 Da PI: 6.0691

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G097900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	52.1	8.9e-17	221	257	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ +g+ Glyma.06G097900.1.p 221 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANRGT 257 ***99999*********************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	1.5E-13	86	121	IPR010399	Tify domain
PROSITE profile	PS51320	14.929	86	121	IPR010399	Tify domain
Pfam	PF06200	6.9E-14	90	120	IPR010399	Tify domain
Pfam	PF06203	7.3E-16	153	195	IPR010402	CCT domain
PROSITE profile	PS51017	12.521	153	195	IPR010402	CCT domain
SMART	SM00401	3.7E-15	215	268	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	9.908	215	273	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.56E-12	218	267	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.0E-15	220	262	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.01E-15	221	266	No hit	No description
PROSITE pattern	PS00344	0	221	248	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.9E-14	221	257	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0030154	Biological Process	cell differentiation
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0005667	Cellular Component	transcription factor complex
GO:0000977	Molecular Function	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	Molecular Function	RNA polymerase II transcription factor binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	Molecular Function	chromatin binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MFGSMNKIVS AEDTDGSVSD HHIHYSSHTI EDDGAASDHH IHYSSHTIEE DGAVSNHHIH 60 YSSHTIEEDG GATVEEVSAV PPLEISINDS SQLTISFRGQ VYVFDAVTPD KVQAVLLLLG 120 GNELTSGSQC AELSSQNQTG EEEYPAKCSL PQRAASLNRF RQKRKERCFD KKVRYSVRQE 180 VALRMHRNKG QFTSSKNQDG TNSWGSDQES GQDAVQSETL CTHCGISSKS TPMMRRGPSG 240 PRSLCNACGL FWANRGTLRD LSKRNQEHSL APPEQVDEGS NNNDFDCRSG IPAQHNNLVN 300 DNKA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.25428	0.0	cotyledon\| root\| seed coat\| somatic embryo\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269\|PubMed:10945256, ECO:0000269\|PubMed:14966217}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00451	DAP	Transfer from AT4G24470	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G097900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096895	0.0	BT096895.1 Soybean clone JCVI-FLGm-21G2 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006580988.1	0.0	uncharacterized protein LOC100784789 isoform X1
Swissprot	Q9LRH6	4e-87	GAT25_ARATH; GATA transcription factor 25
TrEMBL	I1K9S5	0.0	I1K9S5_SOYBN; Uncharacterized protein
STRING	GLYMA06G10280.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68
Representative plant	OGRP831	16	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	2e-89	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	Glyma.06G097900.1.p
Entrez Gene	100784789

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]