PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G097100.1.p
Common NameGLYMA_06G097100, LOC100799956
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 607aa    MW: 65851 Da    PI: 7.2407
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G097100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-09201246144
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                          r++W++eEd +l  av+++G g+W+t a+      +R++ q+  rw
  Glyma.06G097100.1.p 201 RKAWSEEEDMQLRAAVQRWGEGNWATMAKGDDfpIKRSATQLAQRW 246
                          789************************9865555559999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.943196254IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-11198251IPR009057Homeodomain-like
SuperFamilySSF466891.94E-10199252IPR009057Homeodomain-like
SMARTSM007173.3E-9200252IPR001005SANT/Myb domain
PfamPF002493.1E-8201246IPR001005SANT/Myb domain
CDDcd116601.54E-11202251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MPEKKSKKVS FTEEDAVTFI QRYDATTVLT LLQEVAHYSQ PKIDWFELVE KSATGISNAR  60
EYQMLWRHLA YRHSLPENFE DGAEPLDDDS DLECELEALP PVSLECASEA AACVKVMIAS  120
RTLSESAPSS STIEAPLTIN VPVCHSSRTR IENSQPSNLM QGTSFIFPVT VQRQTLPTIS  180
STDGIETKGI VGGNMASKRK RKAWSEEEDM QLRAAVQRWG EGNWATMAKG DDFPIKRSAT  240
QLAQRWSILR KKDGCTNTGT VTSTQYTTAE QLATRHSLSL ALDMPFKKLT APGMTDVKPS  300
TSVKNQVQIR NTTEKVASSF VPPQQALLGS SDLHAKSKLA DEKPVLKGNL ISDPVVKSAT  360
ATLGTRIDPL SNTISQIKVA QVKNAIDTKP AVSSLTKPSI STNLPSDPKN KHVTPLADKG  420
AQVKNAVDTT EPAVSSLTKP SISTNLPSDP KNKHATPLAD KVPLKQDVNP TKELQVSNPS  480
TTPKEKLQEN EPPKVTTGSQ VDSNPEKGRL EKGQETSIPL VKISGGEEVS KDKANQGVVC  540
EEQGSVKKAT EKNNIDKGSQ SLEQDKKINS INQSSNDQNG NDKHVNLPVQ DELSQSAKVV  600
KNDGEC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.50950.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G097100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-119AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527883.10.0uncharacterized protein LOC100799956
TrEMBLI1K9R40.0I1K9R4_SOYBN; Uncharacterized protein
STRINGGLYMA06G10170.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Representative plantOGRP59231520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-63MYB_related family protein