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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G095200.1.p | ||||||||
Common Name | GLYMA_06G095200, LOC100820567 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ZF-HD | ||||||||
Protein Properties | Length: 299aa MW: 32460.6 Da PI: 6.504 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 96.8 | 1.7e-30 | 59 | 115 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY+eC+kNhA+s+GghavDGC+Ef+++ geegt +a+ CaAC+CHRnFHR+e + e Glyma.06G095200.1.p 59 TVRYRECQKNHAVSIGGHAVDGCCEFLAA-GEEGTLEAVICAACNCHRNFHRKEIDGE 115 79**************************9.999********************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-20 | 58 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.9E-28 | 60 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.4E-26 | 61 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.997 | 62 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.38E-20 | 199 | 270 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-31 | 204 | 272 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.0E-25 | 212 | 268 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MEFDEHEDQE QEEEEEEEEM GFSVAAAASY DSLGNAAVRS KISGGDGVAA TVNSGRKGTV 60 RYRECQKNHA VSIGGHAVDG CCEFLAAGEE GTLEAVICAA CNCHRNFHRK EIDGETSPYQ 120 HRSQPQPQPL HPQYHHQFSP YYHRAPPPSA AGYLHHHLVT PPVSQHRPLA LPPLASGGVF 180 SREEEDMSNP SSSGGGGGGG FSGGGGSGSG TKKRFRTKFT QEQKDKMLAF AEKLGWRIQK 240 HDEAAVEQFC AETCIKRHVL KVWMHNNKHT LANSEQHSAG NGSNHLNSTT IIENSQFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-28 | 211 | 274 | 16 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 192 | 206 | SGGGGGGGFSGGGGS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28444 | 0.0 | cotyledon| flower| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G095200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003526539.1 | 0.0 | zinc-finger homeodomain protein 2 isoform X1 | ||||
Refseq | XP_028235640.1 | 0.0 | zinc-finger homeodomain protein 2-like isoform X1 | ||||
Swissprot | Q6YXH5 | 5e-73 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A445K770 | 0.0 | A0A445K770_GLYSO; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | I1K9P4 | 0.0 | I1K9P4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G09970.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 3e-63 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G095200.1.p |
Entrez Gene | 100820567 |
Publications ? help Back to Top | |||
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