PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G086600.1.p
Common NameGLYMA_06G086600, LOC100797291
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 846aa    MW: 92923.3 Da    PI: 6.4262
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G086600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.5e-192078357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Glyma.06G086600.1.p 20 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                         5679*****************************************************97 PP
2START173.31.5e-541693772205
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++ +++l+v s+g  g
  Glyma.06G086600.1.p 169 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDRLSWFRDCRTVDVLNVMSTGngG 257
                          7899******************************************************.9999999999********************* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p     +++vRa +lpSg+li+p+++g+s +++v+h+ l+ +
  Glyma.06G086600.1.p 258 TIELLYMQLYAPTTLAPgRDFWLLRYTSLLEDGSFVVCERSLNNTQNGPAmppVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPW 347
                          ***********************************************99988899*********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqce 205
                          +++++lr+l++s++  +++t++a+l+++++
  Glyma.06G086600.1.p 348 SVPEVLRPLYESSMLLAQRTTMAALRHLRQ 377
                          *************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5971579IPR001356Homeobox domain
SMARTSM003891.3E-151783IPR001356Homeobox domain
SuperFamilySSF466893.68E-171983IPR009057Homeodomain-like
CDDcd000861.27E-162080No hitNo description
PfamPF000461.6E-162178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-182278IPR009057Homeodomain-like
CDDcd146861.16E-672111No hitNo description
PROSITE profilePS5084824.162159387IPR002913START domain
CDDcd088755.28E-77163378No hitNo description
SMARTSM002347.9E-40168378IPR002913START domain
SuperFamilySSF559613.3E-35168379No hitNo description
Gene3DG3DSA:3.30.530.204.1E-20168374IPR023393START-like domain
PfamPF018528.5E-52169377IPR002913START domain
PfamPF086701.6E-51704844IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MMAVSSACKD GSKVALDNGK YVRYTPEQVE ALERLYHECP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SHLVYENSFF  120
RQQTHNNNAT LATTDTNTSC ESVVTSGQRN LTPQQHPPRD ASPAGLLSIA EETLAEFLSK  180
ATGTAVEWVQ MPGMKPGPDS IGIVAISHGC PGVAARACGL VGLEPTRVAE ILKDRLSWFR  240
DCRTVDVLNV MSTGNGGTIE LLYMQLYAPT TLAPGRDFWL LRYTSLLEDG SFVVCERSLN  300
NTQNGPAMPP VQHFVRADML PSGYLIRPCE GGGSIIHIVD HMVLEPWSVP EVLRPLYESS  360
MLLAQRTTMA ALRHLRQISQ EVSQPSVTGW GRRPAALRAL SQRLSKGFNE AVNGFADDGW  420
SMLESDGIDD VTLLVNSSPS KMMGVSLVYN NNGFPSVSSS VLCAKASMLL QNVPPAILLR  480
FLREHRSEWA DSSIDAYSAA AIKAGPCSLP GARSGGFGGQ VILPLAHTIE HEEFMEVIKL  540
ENMGYYRDDM SIPGDVFLLQ LCSGVDEHAV GTSAELVFAP IDASFSDDAP ILPSGFRIIP  600
LDSGTDAASP NRTLDLASAL EVGTTANKAA SDNSAHSGST KSVMTIAFQF AFEVHLQENI  660
ATMARQYVRS IIASVQRVSL ALSPSRFGSH NAFHLPPGTP EAQTLARWIC NSYRFYLGVE  720
LLKCEGSESI LKSLWHHSDA VLCCSLKALP VFTFANQAGL DMLETTLVAL QDITLEKIFD  780
DNGKKTLCTE FPQIMQQGFM CIQGGICLSS MGRPVSYERA VAWKVLNEEE SAHCICFMFI  840
NWSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.280920.0epicotyl| hypocotyl| leaf| meristem| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the procambial cells and the developing vascular system of embryos, roots and shoots. Expressed during the early stages of revascularization after cutting experiment. {ECO:0000269|PubMed:12447534, ECO:0000269|PubMed:8575317}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G086600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526496.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_028235534.10.0homeobox-leucine zipper protein ATHB-15-like
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A445K6S10.0A0A445K6S1_GLYSO; Homeobox-leucine zipper protein ATHB-8
TrEMBLI1K9E80.0I1K9E8_SOYBN; Uncharacterized protein
STRINGGLYMA06G09100.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]