PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G080200.2.p
Common NameGLYMA_06G080200, LOC100804931
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 355aa    MW: 39448.5 Da    PI: 8.5339
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G080200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.76.4e-55281551128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelv++yL +k+++++++  ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdk
  Glyma.06G080200.2.p  28 LPPGFRFHPTDEELVTCYLVNKISDSNFTG-RAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDK 116
                          79*************************999.89***************99999************************************* PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e++++ ++el+g+kktLvfykgrap+gek++Wvmheyr+
  Glyma.06G080200.2.p 117 EIFNSeTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRI 155
                          ***9867888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-6421176IPR003441NAC domain
PROSITE profilePS5100560.53928176IPR003441NAC domain
PfamPF023653.6E-2829155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MQKEKEAIVK EGTTEIEMEG TRAKEETLPP GFRFHPTDEE LVTCYLVNKI SDSNFTGRAI  60
TDVDLNKCEP WELPGKAKMG EKEWYFFSLR DRKYPTGVRT NRATNAGYWK TTGKDKEIFN  120
SETSELIGMK KTLVFYKGRA PRGEKSNWVM HEYRIHSKSS YRTNRDEWVV CRVFKKSGNA  180
KKYPSSNHAR AVNPYSLEIE PNILPPLMMQ LGDPGAHFLY GRNYMNSAEL AELARVLRGG  240
GSTSSVNLPI QSHLSYPTSS STGGGFTISG LNLNLGGGGA TATTQPILRP MQPSPAPVHT  300
MAQVLDANSS MMTTSSLGAE NVGYGAEMSN LNLHGNRYMG VDHCMDLDNY WPSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-562718216171NO APICAL MERISTEM PROTEIN
1ut4_B1e-562718216171NO APICAL MERISTEM PROTEIN
1ut7_A1e-562718216171NO APICAL MERISTEM PROTEIN
1ut7_B1e-562718216171NO APICAL MERISTEM PROTEIN
3swm_A1e-562718219174NAC domain-containing protein 19
3swm_B1e-562718219174NAC domain-containing protein 19
3swm_C1e-562718219174NAC domain-containing protein 19
3swm_D1e-562718219174NAC domain-containing protein 19
3swp_A1e-562718219174NAC domain-containing protein 19
3swp_B1e-562718219174NAC domain-containing protein 19
3swp_C1e-562718219174NAC domain-containing protein 19
3swp_D1e-562718219174NAC domain-containing protein 19
4dul_A1e-562718216171NAC domain-containing protein 19
4dul_B1e-562718216171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G080200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-101AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581414.10.0NAC domain-containing protein 100 isoform X2
RefseqXP_028235425.10.0NAC domain-containing protein 100-like isoform X2
TrEMBLK7KTS70.0K7KTS7_SOYBN; Uncharacterized protein
STRINGGLYMA06G08440.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-102NAC domain containing protein 38