PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 195aa MW: 22161 Da PI: 8.4779

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G064000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.1	1e-18	7	54	2	53
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 +y+GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + Glyma.06G064000.1.p 7 RYRGVRQRH-WGSWVSEIRHP-----IlkTRIWLGTFETAEDAARAYDEAARLM 54 69****9.******8.....556*******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	4.18E-34	6	66	No hit	No description
Gene3D	G3DSA:3.30.730.10	7.3E-34	7	64	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.14	7	64	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-41	7	70	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.89E-21	7	66	IPR016177	DNA-binding domain
Pfam	PF00847	1.2E-11	7	55	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.2E-11	8	19	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.2E-11	30	46	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MARSQQRYRG VRQRHWGSWV SEIRHPILKT RIWLGTFETA EDAARAYDEA ARLMCGTRAR 60 TNFPYNPNAS QSSSSKLLSA TLTAKLHRCY MASLQMTRPS SQPETQRVVA SPNVITSSAS 120 NFSMKSNETE TMLLPQKRQE EEQEGEGNWV FKKVKVENAQ QFKPLEEDHI EQMIEELLHY 180 GSIELCSVIP AQAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-18	8	71	6	70	ATERF1
3gcc_A	2e-18	8	71	6	70	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.21471	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for all lupin cells independent of the respective tissue.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00526	DAP	Transfer from AT5G25190	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G064000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	1e-154	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003526228.1	1e-144	protein PPLZ02
Swissprot	P16146	4e-86	PZ02_LUPPO; Protein PPLZ02
TrEMBL	I1K8Q2	1e-143	I1K8Q2_SOYBN; Uncharacterized protein
STRING	GLYMA06G06780.1	1e-144	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1106	34	110
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25190.1	5e-59	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.06G064000.1.p
Entrez Gene	100819158

Publications ? help Back to Top
Perrey R,Warskulat U,Wink M Molecular cloning of a lupin-specific gene from a cDNA library of suspension-cultured cells of Lupinus polyphyllus. Plant Mol. Biol., 1990. 15(1): p. 175-6 [PMID:2103434]