PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ARR-B

Protein Properties

Length: 697aa MW: 76774.2 Da PI: 7.0028

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G063500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.7	2.6e-28	204	257	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl Glyma.06G063500.1.p 204 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQKYRL 257 79*****************.******************************8 PP
2	Response_reg	75.2	2.4e-25	20	128	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl vdD+p+ + +l+++l++ +y +++++ ++ +al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+g+ +++ + Glyma.06G063500.1.p 20 VLAVDDDPTCLLVLETLLRRCQY-HATTTNQAIKALALLREHKdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDTKLVMK 107 799******************.***********999889***************87754.558************* PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 ++ Ga d+l Kp+ +eel + Glyma.06G063500.1.p 108 GISHGACDYLLKPVRMEELKN 128 ****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF036392	3.4E-170	1	678	IPR017053	Response regulator B-type, plant
Gene3D	G3DSA:3.40.50.2300	3.6E-42	17	153	No hit	No description
SuperFamily	SSF52172	1.17E-35	17	141	IPR011006	CheY-like superfamily
SMART	SM00448	4.0E-31	18	130	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	42.868	19	134	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.7E-22	20	128	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	1.26E-26	21	134	No hit	No description
PROSITE profile	PS51294	11.959	201	260	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-30	201	262	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.09E-19	202	261	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.0E-25	204	257	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-6	206	256	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MTVEKKMNDS GDEFPVGMRV LAVDDDPTCL LVLETLLRRC QYHATTTNQA IKALALLREH 60 KDKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DTKLVMKGIS HGACDYLLKP 120 VRMEELKNIW QHVIRRKKFD SKEKNKTRNI DKPTSNSSNG LGSSGTGNSD HNEKLTKKRK 180 DQDEDEDEEQ ENDHDNDDPS AQKKPRVVWS VELHRKFVAA VNQLGIDKAV PKKILDLMNV 240 EKLTRENVAS HLQKYRLYLK RISCVANQQT NMVVALGGAD PSYLRMNSVS GVGHIQSISG 300 SGQLHNNAFR SFPPSGIINR LNTPAGLNVH GFPSGVLQLS QSQNLKNTND NLKFQSAIVP 360 ANQNGVHGMT VSVGLDQLQN NKGVMSVQNL TTVFDAKTTF PISNKLPDPR PKITNSGSHT 420 PDVSFSNNAL MLEPRPQGTQ GSVRIETLSS SVASQHSEFS LSLLDQGRYS DNWASTVQPS 480 VIQTNSYPPS ECFGQTNIPP TDNMASVPLQ GGNLSGASIT SLSRQSYDSM TDMHSEGVTF 540 TNRPGHISSN VPYQGWHDNN QDATHHSNIL SINSLTPVNG AAVPAGHAAM NSALHRNLDF 600 NYCDPLQMKH EGFVELTDEA LSKQHQGNIM NLPKSQQSHF SNNLGSLEDL VSSMMKQEND 660 KMKLLDGNLI CNNYSGGLSR CDSRFSSTFQ NIMHPR*

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MTVEKKMNDS GDEFPVGMRV LAVDDDPTCL LVLETLLRRC QYHATTTNQA IKALALLREH  60
KDKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DTKLVMKGIS HGACDYLLKP  120
VRMEELKNIW QHVIRRKKFD SKEKNKTRNI DKPTSNSSNG LGSSGTGNSD HNEKLTKKRK  180
DQDEDEDEEQ ENDHDNDDPS AQKKPRVVWS VELHRKFVAA VNQLGIDKAV PKKILDLMNV  240
EKLTRENVAS HLQKYRLYLK RISCVANQQT NMVVALGGAD PSYLRMNSVS GVGHIQSISG  300
SGQLHNNAFR SFPPSGIINR LNTPAGLNVH GFPSGVLQLS QSQNLKNTND NLKFQSAIVP  360
ANQNGVHGMT VSVGLDQLQN NKGVMSVQNL TTVFDAKTTF PISNKLPDPR PKITNSGSHT  420
PDVSFSNNAL MLEPRPQGTQ GSVRIETLSS SVASQHSEFS LSLLDQGRYS DNWASTVQPS  480
VIQTNSYPPS ECFGQTNIPP TDNMASVPLQ GGNLSGASIT SLSRQSYDSM TDMHSEGVTF  540
TNRPGHISSN VPYQGWHDNN QDATHHSNIL SINSLTPVNG AAVPAGHAAM NSALHRNLDF  600
NYCDPLQMKH EGFVELTDEA LSKQHQGNIM NLPKSQQSHF SNNLGSLEDL VSSMMKQEND  660
KMKLLDGNLI CNNYSGGLSR CDSRFSSTFQ NIMHPR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	6e-26	200	263	1	64	ARR10-B
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.19674	0.0	root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G063500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093836	0.0	BT093836.1 Soybean clone JCVI-FLGm-24O12 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003526216.1	0.0	two-component response regulator ARR12
Swissprot	B8AEH1	1e-142	ORR23_ORYSI; Two-component response regulator ORR23
Swissprot	Q6K8X6	1e-142	ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBL	I1K8P7	0.0	I1K8P7_SOYBN; Two-component response regulator
STRING	GLYMA06G06730.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF956	34	112
Representative plant	OGRP292	17	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-129	response regulator 12

Link Out ? help Back to Top
Phytozome	Glyma.06G063500.1.p
Entrez Gene	100809002

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]