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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G059600.1.p | ||||||||
Common Name | GLYMA_06G059600, LOC100804201 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CO-like | ||||||||
Protein Properties | Length: 311aa MW: 33958.1 Da PI: 7.6416 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26.7 | 1.2e-08 | 4 | 43 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ +++ ++l+C+ + +lC C ++ H H Glyma.06G059600.1.p 4 KLCDSCKSATATLYCRPDAAFLCGACDSKVHAAnklasrH 43 68***************************99555555556 PP | |||||||
2 | zf-B_box | 23.2 | 1.4e-07 | 47 | 91 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e+ +++ C+ + lC C +H+ H+++p+ Glyma.06G059600.1.p 47 VLCEVCEQAPAHVTCKADAAALCLACDRDIHSAnplasrHERIPV 91 68*****************************66899999998885 PP | |||||||
3 | CCT | 70.6 | 3.9e-24 | 253 | 296 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Glyma.06G059600.1.p 253 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 296 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.424 | 1 | 48 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.0E-13 | 1 | 48 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.5E-7 | 4 | 45 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.64E-8 | 5 | 46 | No hit | No description |
PROSITE profile | PS50119 | 10.751 | 44 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.4E-6 | 47 | 91 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.4E-9 | 49 | 91 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.787 | 253 | 295 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.4E-18 | 253 | 295 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MASKLCDSCK SATATLYCRP DAAFLCGACD SKVHAANKLA SRHPRVVLCE VCEQAPAHVT 60 CKADAAALCL ACDRDIHSAN PLASRHERIP VTPFFESVHS VKASSPINFH HRFFSDADAD 120 ADVSTEEAEA ASWLLPNPKT DLNSSQYLFS ETEPVPYIDL DYAAMDPKTE QKSSATADGV 180 VPVQSNFEPF TYGYKYNTTL SQSQSHMSQS VSSPSSMEVG VVPDGNTMSE ISNCSYSKVA 240 PVTVTAQFSA ADREARVLRY REKRKNRKFE KTIRYASRKA YAETRPRIKG RFAKRTDADP 300 LAGYGVVPSC * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.16857 | 0.0 | cotyledon| epicotyl| flower| hypocotyl| leaf| pod| root| seed coat| somatic embryo| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G059600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093300 | 0.0 | BT093300.1 Soybean clone JCVI-FLGm-17I7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003526113.1 | 0.0 | zinc finger protein CONSTANS-LIKE 4 | ||||
Refseq | XP_028235143.1 | 0.0 | zinc finger protein CONSTANS-LIKE 4-like | ||||
Swissprot | Q940T9 | 1e-111 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A0R4J3G9 | 0.0 | A0A0R4J3G9_SOYBN; CONSTANS-like zinc finger protein | ||||
TrEMBL | A0A445K5U8 | 0.0 | A0A445K5U8_GLYSO; Zinc finger protein CONSTANS-LIKE 4 | ||||
STRING | GLYMA06G06300.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1302 | 34 | 93 |
Representative plant | OGRP691 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 2e-96 | CONSTANS-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G059600.1.p |
Entrez Gene | 100804201 |