PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G058400.1.p
Common NameGLYMA_06G058400, LOC100817386
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 286aa    MW: 31525.3 Da    PI: 4.5529
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G058400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.8e-183988255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr +k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa  +l+g
  Glyma.06G058400.1.p 39 LYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAALYCLRG 88
                         59****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.24E-273898No hitNo description
Gene3DG3DSA:3.30.730.104.5E-283997IPR001471AP2/ERF domain
SMARTSM003801.2E-3039102IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-203996IPR016177DNA-binding domain
PROSITE profilePS5103221.7593996IPR001471AP2/ERF domain
PfamPF008471.3E-104088IPR001471AP2/ERF domain
PRINTSPR003678.0E-94051IPR001471AP2/ERF domain
PRINTSPR003678.0E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MENNNHHAMA AGASSDSNTS DHTTPISSSC VNDNNNNKLY KGVRKRKWGK WVSEIRLPNS  60
RERIWLGSYD SPEKAARAFD AALYCLRGRH ANFNFPNTPC NMDTATNAPP NQSLTPQEIQ  120
EVAAKFANQV SPLLQKPQEQ PQPQRSSDGG GGGANSSSFG SKLLCKSDSI AESSTTSTTT  180
NCTPTTTASS CSATMYECDG TEQVDRGDMM DWTFLNVFDF SNEVVLPAVG SDYNDLYNSE  240
LHKMHSDSGE LLYSTPFEGY EQLIEADHDD DDPFSHQSFL WNWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14401061581Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14046KGVRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G058400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-82AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527767.10.0ethylene-responsive transcription factor TINY
RefseqXP_028235117.10.0ethylene-responsive transcription factor TINY-like
TrEMBLA0A0B2RYF70.0A0A0B2RYF7_GLYSO; Ethylene-responsive transcription factor ERF018
TrEMBLA0A0R4J3G70.0A0A0R4J3G7_SOYBN; Uncharacterized protein
STRINGGLYMA06G06101.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.13e-42ERF family protein