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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G051600.6.p | ||||||||
Common Name | GLYMA_06G051600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 517aa MW: 57371.4 Da PI: 6.0853 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.1 | 1.4e-08 | 433 | 471 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + Glyma.06G051600.6.p 433 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 471 5887779******************************88 PP | |||||||
2 | BELL | 74.4 | 1.8e-24 | 305 | 374 | 1 | 71 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 +r++ ++kk++Ll+ll+ Vd+rY+q+ ++++tv+s+F+a+++l++ ++++++Al++iS +r L+++i++ Glyma.06G051600.6.p 305 QRHAAESKKSQLLTLLQLVDNRYSQCLDEIHTVVSAFQAATELDP-QIHAHFALQTISILYRDLRERISNY 374 68999****************************************.**********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.6E-21 | 229 | 373 | IPR006563 | POX domain |
Pfam | PF07526 | 1.4E-26 | 235 | 372 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.078 | 412 | 475 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-6 | 415 | 479 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.83E-11 | 415 | 476 | No hit | No description |
SuperFamily | SSF46689 | 2.1E-15 | 417 | 484 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.5E-26 | 418 | 481 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.0E-15 | 432 | 471 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MESDMYTAAL DISGREATVI DEISQHSASN PLIQCYSLDL NNQSHIISGI SMLSGEQVIS 60 QGKTIVAVGD ASNPMENTEL QEHLAGGMPI TPSSLAAILA ARTGLEENLG NSSSALPPSL 120 CSMGALGAFF NNLQEIDGTC QPYPFIANLD QNEWPSSNVA NMANHAYHSS HFSKELSLSL 180 ATSTTAGMCS EVSCSNVTPC MNGTMSGLEQ ASCSSSRELS MNLGGNKYVE FSPEVLESRY 240 LVGIQEILAQ IGRYSFENLE QLNYSAGNHR SGGNKSSSAF PPKRRILIDH NANSTYEAHA 300 ESPLQRHAAE SKKSQLLTLL QLVDNRYSQC LDEIHTVVSA FQAATELDPQ IHAHFALQTI 360 SILYRDLRER ISNYILAMGS NFNNSCSEEN EWSVETSFLQ KQWALQQLKR KDQLWRPQRG 420 LPERSVSVLR AWMFQNFLHP YPKDAEKHLL AVKSGLTRSQ VSNWFINARV RLWKPMIEEM 480 YAEMNKRKAC RNEEGMQSNH GTRISTTNER FNQCQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-14 | 421 | 479 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-14 | 421 | 479 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 1e-14 | 421 | 478 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-14 | 421 | 478 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}. | |||||
Uniprot | TISSUE SPECIFICITY: Most abundant in flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G051600.6.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094559 | 0.0 | BT094559.1 Soybean clone JCVI-FLGm-18H4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003525994.2 | 0.0 | homeobox protein ATH1 isoform X3 | ||||
Refseq | XP_028235041.1 | 0.0 | homeobox protein ATH1-like isoform X2 | ||||
Swissprot | P48731 | 1e-102 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | K7KT77 | 0.0 | K7KT77_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G05430.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 4e-96 | homeobox gene 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G051600.6.p |
Publications ? help Back to Top | |||
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