PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C3H

Protein Properties

Length: 254aa MW: 28438.8 Da PI: 8.3026

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G050300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.8	1e-09	84	104	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++++ G Ck+Gd+C+F+Hg Glyma.06G050300.1.p 84 ACPDYQK-GNCKRGDTCQFSHG 104 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	6.28E-5	78	108	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-6	79	105	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.652	80	106	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.9E-6	83	106	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-7	84	104	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	32	114	137	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MIPNVEIPHW DADGGGPLSP FISSSSNADK CSLLFSSDHF RMFQFKVRIC PRGRSHDWTE 60 CPYAHPAEKA RRRDPRKYHY SGTACPDYQK GNCKRGDTCQ FSHGVFECWL HPSRYRTHLC 120 KDGTTCRRRV CFFAHTTEQL RLVVTDSSSS SFVSSPTSVL NSSSFSDSSP YSFVREIVNS 180 TRNVKIEDSG LTRCVFGSPR GGFLSVNGCE EEPAMERVES GKDIRARIYA KLSRENTIGA 240 SDPDIGWVSE LVK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.4156	0.0	flower\| root\| seed coat\| somatic embryo

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G050300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095736	0.0	BT095736.1 Soybean clone JCVI-FLGm-19F20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304563.2	0.0	zinc finger CCCH domain-containing protein
Refseq	XP_028235023.1	0.0	zinc finger CCCH domain-containing protein 23-like
Swissprot	O82199	2e-78	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	A0A445K4U4	0.0	A0A445K4U4_GLYSO; Zinc finger CCCH domain-containing protein 20
TrEMBL	I1K8B1	0.0	I1K8B1_SOYBN; Uncharacterized protein
STRING	GLYMA06G05300.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2056	31	76
Representative plant	OGRP1170	16	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25900.2	5e-73	C3H family protein

Link Out ? help Back to Top
Phytozome	Glyma.06G050300.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]