PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G042100.3.p | ||||||||
Common Name | DREB2, GLYMA_06G042100, Glyma06g04490.2, LOC732579 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 160aa MW: 17950 Da PI: 9.8681 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.1 | 1.8e-17 | 33 | 82 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a l+g Glyma.06G042100.3.p 33 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYATPVAAARAYDTAVFHLRG 82 69*****99.**********9...336**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.89E-21 | 33 | 91 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.155 | 33 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-37 | 33 | 96 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-10 | 34 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.34E-28 | 34 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-30 | 34 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-12 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-12 | 72 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MEEAGLGDCC SSNTTITRKS EKRKQQHQQQ EKPYRGIRMR KWGKWVAEIR EPNKRSRIWL 60 GSYATPVAAA RAYDTAVFHL RGPSARLNFP ELLSQDDDVS TQQQGKMSAD SIRKKATQVG 120 ARVDALQTAL QQSSSTHSIS SSHVSYEKPD LNEYPKPED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-16 | 32 | 90 | 4 | 63 | ATERF1 |
3gcc_A | 9e-16 | 32 | 90 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 24 | RKSEKRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.8372 | 0.0 | cotyledon| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in flowers, leaves, and stems, and at very low levels in roots. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G042100.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG965100 | 0.0 | HG965100.1 Glycine max mRNA for transcription factor DREB2 protein (DREB2 gene), cultivar BacGiang (BG). | |||
GenBank | LK936509 | 0.0 | LK936509.1 Glycine max mRNA for DREB2 factor (DREB2 gene), cultivar DT26. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237254.2 | 1e-117 | dehydration-responsive element binding protein 2 | ||||
Refseq | XP_028234921.1 | 1e-117 | ethylene-responsive transcription factor RAP2-1-like | ||||
Swissprot | Q8LC30 | 6e-50 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A445K4H0 | 1e-115 | A0A445K4H0_GLYSO; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | C5IU97 | 1e-115 | C5IU97_SOYBN; AP2-EREBP transcription factor | ||||
STRING | GLYMA06G04490.2 | 1e-116 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67190.1 | 6e-48 | DREB and EAR motif protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G042100.3.p |
Entrez Gene | 732579 |
Publications ? help Back to Top | |||
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