PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G040900.1.p
Common NameGLYMA_06G040900, LOC100781389
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 364aa    MW: 40469.4 Da    PI: 8.3687
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G040900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.76e-36251172103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k
  Glyma.06G040900.1.p  25 FLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEK 105
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i+r+k++
  Glyma.06G040900.1.p 106 HLLCEIHRRKTA 117
                          *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.5E-6121114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.2E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.3E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MALLLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ  120
QGSMNHHHHH SHSPLGVNVS VPTFFPFSSR VSISPSNDSD DQANWCDSPP RGSTSLVNGA  180
AAAANYNTSV TALSEDNERL RRSNNMLMSE LAHMKKLYND IIYFVQNHVK PVAPSNSYSS  240
SLLLCNTPSA TPITSGGNVS MTQRPTNQLL GYYSTNPKQG ATQITQPQTY VVNSPTNTSR  300
SSITIVEGPN SNINSCKTKL FGVSLQSKKR VHPDYGSNPE TNKARLVLEK DDLGLNLMPP  360
STC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-212111626131Heat shock factor protein 1
5d5v_B1e-212111626131Heat shock factor protein 1
5d5v_D1e-212111626131Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.39750.0leaf| meristem| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G040900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3369550.0DQ336955.1 Glycine max cultivar Williams 82 clone BAC gmw1-52d3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528294.10.0heat stress transcription factor B-4
RefseqXP_028234909.10.0heat stress transcription factor B-4-like
SwissprotQ9C6351e-123HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A445K4W80.0A0A445K4W8_GLYSO; Heat stress transcription factor B-4
TrEMBLQ00M680.0Q00M68_SOYBN; Heat shock transcription factor (HSF)
STRINGGLYMA06G04390.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-118heat shock transcription factor B4
Publications ? help Back to Top
  1. Schlueter JA,Scheffler BE,Schlueter SD,Shoemaker RC
    Sequence conservation of homeologous bacterial artificial chromosomes and transcription of homeologous genes in soybean (Glycine max L. Merr.).
    Genetics, 2006. 174(2): p. 1017-28
    [PMID:16888343]