PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G038200.1.p
Common NameGLYMA_06G038200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 89aa    MW: 10251 Da    PI: 9.1187
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G038200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC41.13.9e-131532476
                NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkk 76
                         arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t++ 
  Glyma.06G038200.1.p  1 ARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNS 53
                         7***************************************9999888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008082.2E-16157IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.7E-21157IPR009072Histone-fold
SuperFamilySSF471132.29E-12758IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
ARIKKIMQAD EDVGKIALAV PVLVSKALEL FLQDLCDRTY EITLQRGAKT MNSLHLNSET  60
IYNGFPIIRE RIKDLQDFQP NWLIMYRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A4e-181661580Transcription Regulator NC2 alpha chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G038200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941559e-90BT094155.1 Soybean clone JCVI-FLGm-18C10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018733368.13e-33PREDICTED: dr1-associated corepressor
RefseqXP_028192968.15e-34dr1-associated corepressor-like
RefseqXP_028192969.15e-34dr1-associated corepressor-like
SwissprotQ149192e-16NC2A_HUMAN; Dr1-associated corepressor
TrEMBLA0A0R0JBL08e-59A0A0R0JBL0_SOYBN; Uncharacterized protein (Fragment)
TrEMBLA0A445HQF48e-59A0A445HQF4_GLYSO; Dr1-associated corepressor (Fragment)
STRINGGLYMA06G04161.16e-33(Glycine max)
STRINGXP_010067677.19e-33(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Representative plantOGRP21791635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.15e-33nuclear factor Y, subunit C11