PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 222aa MW: 24513 Da PI: 7.5852

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G036800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1e-17	31	76	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l +v+++G+++W++I+r++ gR++k+c++rw + Glyma.06G036800.1.p 31 KGPWSAEEDRILTGLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 76 79***************************9.*********985 PP
2	Myb_DNA-binding	56.7	5.7e-18	85	127	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++++Ed+ ++ a++q+G++ W+tIar ++ gRt++ +k++w++ Glyma.06G036800.1.p 85 PFSAQEDDTIIAAHAQYGNR-WATIARLLP-GRTDNAVKNHWNST 127 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.219	26	81	IPR017930	Myb domain
SuperFamily	SSF46689	1.47E-31	28	124	IPR009057	Homeodomain-like
SMART	SM00717	6.1E-15	30	79	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-16	31	76	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.1E-24	32	84	IPR009057	Homeodomain-like
CDD	cd00167	2.71E-14	33	75	No hit	No description
SMART	SM00717	1.3E-15	82	130	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.766	83	132	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-22	85	131	IPR009057	Homeodomain-like
CDD	cd00167	2.10E-12	85	128	No hit	No description
Pfam	PF00249	9.0E-15	85	127	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MEATNRSSSS TSSSSDCCSS ESNPNKPDRI KGPWSAEEDR ILTGLVERYG PRNWSLISRY 60 IKGRSGKSCR LRWCNQLSPA VEHRPFSAQE DDTIIAAHAQ YGNRWATIAR LLPGRTDNAV 120 KNHWNSTLKR RAKGININVN HANNEVAASS SAPSRHFDFE DDPLTALTLA PPGIANGTVA 180 EDAVPDHRAS PEGFWDMMRD VIAREVREYV SSNFSDNSGF H*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-42	27	132	3	108	B-MYB
1h88_C	3e-41	27	132	54	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-41	27	132	54	159	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.14845	0.0	meristem\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G036800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031192	0.0	KT031192.1 Glycine max clone HN_CCL_38 MYB/HD-like transcription factor (Glyma06g04010.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001235925.1	1e-164	MYB transcription factor MYB124
Refseq	XP_028234861.1	1e-164	transcription factor MYB44-like
TrEMBL	A0A445K477	1e-162	A0A445K477_GLYSO; Transcription factor MYB77
TrEMBL	Q0PJI9	1e-162	Q0PJI9_SOYBN; MYB transcription factor MYB124
STRING	GLYMA06G04010.1	1e-163	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5074	32	56
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	7e-59	myb domain protein 77

Link Out ? help Back to Top
Phytozome	Glyma.06G036800.1.p
Entrez Gene	778051

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]