PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 470aa MW: 50062.4 Da PI: 9.113

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G033300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Glyma.06G033300.1.p 58 FVCEICNKGFQRDQNLQLHRRGH 80 89*******************88 PP
2	zf-C2H2	13.6	0.0002	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s+ k H++t+ Glyma.06G033300.1.p 134 WQCERCSKKYAVHSDWKAHMKTC 156 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.21E-7	57	80	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-5	57	80	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	7.4E-5	58	80	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	58	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	58	80	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	60	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	99	129	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.8E-4	122	155	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.21E-7	129	155	No hit	No description
SMART	SM00355	84	134	154	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MTEPQNPSPL THSPALEIAP QTQPLPPPKK KRNLPGMPDP DAEVIALSPK TLLATNRFVC 60 EICNKGFQRD QNLQLHRRGH NLPWKLRQRG SKEPQKKAYV CPEPSCVHHN PARALGDLTG 120 IKKHFCRKHG EKKWQCERCS KKYAVHSDWK AHMKTCGTRE YRCDCGTLFS RRDSFITHRA 180 FCDVLAQESA RAQDQAQGGS SNSYVVVVSS SPPTPPLTPS ASVVSPTLSI QSSEIPENPS 240 TKVSPTSPNA SCFVTSSSST PSSTTSVFAS VLAPSTTPTT PSQSPSNSTC SFSNLMSNLA 300 RSENSNALMR EPTSLSLSTP PYHSNNDPLH YTALPQPALS ATALLQKAAQ MGASNASLLR 360 GLGLARTSSS FGKDEGVNIN ATTTLQWNGQ VKQENHPVVD NLGLGLPCGS GSVPDVMMGP 420 TTPFVGQPMT RDLLGLSVGG GATSRGGLSA LLTSFGGNFD SPSEGGVHR*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MTEPQNPSPL THSPALEIAP QTQPLPPPKK KRNLPGMPDP DAEVIALSPK TLLATNRFVC  60
EICNKGFQRD QNLQLHRRGH NLPWKLRQRG SKEPQKKAYV CPEPSCVHHN PARALGDLTG  120
IKKHFCRKHG EKKWQCERCS KKYAVHSDWK AHMKTCGTRE YRCDCGTLFS RRDSFITHRA  180
FCDVLAQESA RAQDQAQGGS SNSYVVVVSS SPPTPPLTPS ASVVSPTLSI QSSEIPENPS  240
TKVSPTSPNA SCFVTSSSST PSSTTSVFAS VLAPSTTPTT PSQSPSNSTC SFSNLMSNLA  300
RSENSNALMR EPTSLSLSTP PYHSNNDPLH YTALPQPALS ATALLQKAAQ MGASNASLLR  360
GLGLARTSSS FGKDEGVNIN ATTTLQWNGQ VKQENHPVVD NLGLGLPCGS GSVPDVMMGP  420
TTPFVGQPMT RDLLGLSVGG GATSRGGLSA LLTSFGGNFD SPSEGGVHR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-33	130	191	3	64	Zinc finger protein JACKDAW
5b3h_F	3e-33	130	191	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.20651	0.0	somatic embryo

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269\|PubMed:21571950}.
Uniprot	TISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269\|PubMed:21571950}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G033300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	1e-141	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003527695.1	0.0	protein indeterminate-domain 2
Refseq	XP_028234811.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q9LVQ7	1e-128	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A445K420	0.0	A0A445K420_GLYSO; Protein indeterminate-domain 1 isoform B
STRING	GLYMA06G03630.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86
Representative plant	OGRP95	16	242

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-118	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Glyma.06G033300.1.p
Entrez Gene	100818095

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]