PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G029100.1.p
Common NameGLYMA_06G029100, LOC100807409
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 638aa    MW: 70822.9 Da    PI: 5.375
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G029100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-093964331954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +e+  LA+++gLt +qV +WF N R +
  Glyma.06G029100.1.p 396 FEHflHPYPKDSEKIMLARQTGLTRNQVANWFINARVR 433
                          665559******************************88 PP
2BELL126.21.3e-40267338172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erq+l  kk+kLls+l+eVdkrY+qy++q+q+v+ssF++vag+g+a+pYt+lAl++iSrhFrcL+dai++qi
  Glyma.06G029100.1.p 267 ERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTTLALRTISRHFRCLRDAISGQI 338
                          6899999****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-61189336IPR006563POX domain
PfamPF075262.3E-50195335IPR006563POX domain
PROSITE profilePS5007112.438374437IPR001356Homeobox domain
CDDcd000861.33E-12377438No hitNo description
SMARTSM003891.6E-9377441IPR001356Homeobox domain
SuperFamilySSF466892.31E-17378444IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-28380443IPR009057Homeodomain-like
PfamPF059203.1E-17394433IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MYPNQAFSSG SYAEMMSGTS LLPHDYSETV GGGQNEVKFI TAMGETVTMH SINGHSNAAN  60
GDPSCNSFAG DSHVVSRTQM GMADSEQNVN CQGLSLSLGT LMPSNASVSP FQYQYHDTGL  120
LPLMNDYPNP KGAMSLKNDE GNNLHREFRS AECMASVSSG GFLDMVKKEC FYNPHDPSMC  180
LKEVPSDLPG YSNSILNSQY LKAAQDLLDE IVSVRKALKQ SGMEKQENTG LDGSKDSDGK  240
STSQSMQMSS GPNGSTANAS SELSSAERQN LLDKKTKLLS MLDEVDKRYR QYCHQMQIVV  300
SSFDMVAGCG AAEPYTTLAL RTISRHFRCL RDAISGQIQV TQRSLGEQEG IPRLRYVDQQ  360
LRQQKALQQL GVMRQAWRPQ RGLPESSVSI LRAWLFEHFL HPYPKDSEKI MLARQTGLTR  420
NQVANWFINA RVRLWKPMVE EMYKEEFGDS EMNCNLSSEN NTVKCKKDDL VQESDNINNN  480
NKWEETQDNL VTVDSVQVQP QAELDRGVNV ENVVMDSGTG KLQGDQNQQR LGMNNNNNFY  540
SISTNQNDGG LMGCSTHATY DLSELGNFTV GSHVSLALEL RNCESDGFAM SDDAIRKRRN  600
QALASSPETD LLDYHFTDSG KQQHRFGNPH LLHEFVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16383440158Homeobox protein Meis1
4xrs_B2e-16383440158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.412680.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G029100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527678.10.0BEL1-like homeodomain protein 7
RefseqXP_006581186.10.0BEL1-like homeodomain protein 7
RefseqXP_014632703.10.0BEL1-like homeodomain protein 7
RefseqXP_014632704.10.0BEL1-like homeodomain protein 7
RefseqXP_025984604.10.0BEL1-like homeodomain protein 7
RefseqXP_028234756.10.0BEL1-like homeodomain protein 7
RefseqXP_028234757.10.0BEL1-like homeodomain protein 7
RefseqXP_028234758.10.0BEL1-like homeodomain protein 7
RefseqXP_028234760.10.0BEL1-like homeodomain protein 7
SwissprotQ9FWS91e-115BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLA0A445K3X10.0A0A445K3X1_GLYSO; BEL1-like homeodomain protein 3 isoform A
TrEMBLI1K7P20.0I1K7P2_SOYBN; Uncharacterized protein
STRINGGLYMA06G03200.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.21e-106BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]