PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G027500.3.p | ||||||||
Common Name | GLYMA_06G027500, LOC100805274 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SRS | ||||||||
Protein Properties | Length: 302aa MW: 33032.5 Da PI: 7.7425 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 209.6 | 7.9e-65 | 103 | 242 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 s +++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrer+qqlaa++++++ ++kr++++ +++++ s Glyma.06G027500.3.p 103 SMSMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERHQQLAALQQQHQ------HPKRHHRD------TTTTQLAS 180 6789**************************************************99855442......23333322......22223334 PP DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ le ++P+evs++avfrcvrvs+vd ++e++aYqt+v+igGhvfkG+LydqG+e+ Glyma.06G027500.3.p 181 APQPIIGLELGQFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGFLYDQGPES 242 456678999***************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.5E-61 | 105 | 241 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.0E-26 | 107 | 149 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.8E-25 | 192 | 240 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009299 | Biological Process | mRNA transcription | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MAGFFSLGGS QNKEEEEVEK GGDKNNLLLL RNEEIYNSKG GFEIWPQSSS SYHQHQNQAY 60 QNYFAFGVGP SRRNRSEDVS LCVSDHESTR FGLTVMRSGV SSSMSMNCQD CGNQAKKDCS 120 HLRCRTCCKS RGFQCQTHVK STWVPAAKRR ERHQQLAALQ QQHQHPKRHH RDTTTTQLAS 180 APQPIIGLEL GQFPPEVSTS AVFRCVRVSA VDASDEQCAY QTSVNIGGHV FKGFLYDQGP 240 ESSYTTSAAA EGSSGGEPQP LGLITGATTA TSGNNPFDPS LYPAPLNAFM AGTQFFQHPR 300 S* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In young plants, detected at a low level only in the root tips and lateral root primordia. In fully open flowers, primarily observed in the filaments and anthers. {ECO:0000269|PubMed:20706774}. | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in the filaments of flowers, the shoot apex regions and pollen. Also present in leaves. {ECO:0000269|PubMed:20706774}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00152 | DAP | Transfer from AT1G19790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G027500.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 5e-88 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527675.1 | 0.0 | protein SHI RELATED SEQUENCE 5 | ||||
Refseq | XP_028234734.1 | 0.0 | protein SHI RELATED SEQUENCE 5-like | ||||
Refseq | XP_028234736.1 | 0.0 | protein SHI RELATED SEQUENCE 5-like | ||||
Swissprot | Q9FXH7 | 4e-79 | SRS7_ARATH; Protein SHI RELATED SEQUENCE 7 | ||||
TrEMBL | A0A445K3R5 | 0.0 | A0A445K3R5_GLYSO; Protein SHI RELATED SEQUENCE 7 | ||||
TrEMBL | I1K7M7 | 0.0 | I1K7M7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G03030.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19790.2 | 1e-63 | SHI-related sequence 7 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G027500.3.p |
Entrez Gene | 100805274 |
Publications ? help Back to Top | |||
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