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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.06G027500.1.p |
| Common Name | GLYMA_06G027500, LOC100805274 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
SRS |
| Protein Properties |
Length: 302aa MW: 33032.5 Da PI: 7.7425 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.06G027500.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 209.6 | 7.9e-65 | 103 | 242 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92
s +++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrer+qqlaa++++++ ++kr++++ +++++ s
Glyma.06G027500.1.p 103 SMSMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERHQQLAALQQQHQ------HPKRHHRD------TTTTQLAS 180
6789**************************************************99855442......23333322......22223334 PP
DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
++ le ++P+evs++avfrcvrvs+vd ++e++aYqt+v+igGhvfkG+LydqG+e+
Glyma.06G027500.1.p 181 APQPIIGLELGQFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGFLYDQGPES 242
456678999***************************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MAGFFSLGGS QNKEEEEVEK GGDKNNLLLL RNEEIYNSKG GFEIWPQSSS SYHQHQNQAY 60
QNYFAFGVGP SRRNRSEDVS LCVSDHESTR FGLTVMRSGV SSSMSMNCQD CGNQAKKDCS 120
HLRCRTCCKS RGFQCQTHVK STWVPAAKRR ERHQQLAALQ QQHQHPKRHH RDTTTTQLAS 180
APQPIIGLEL GQFPPEVSTS AVFRCVRVSA VDASDEQCAY QTSVNIGGHV FKGFLYDQGP 240
ESSYTTSAAA EGSSGGEPQP LGLITGATTA TSGNNPFDPS LYPAPLNAFM AGTQFFQHPR 300
S*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In young plants, detected at a low level only in the root tips and lateral root primordia. In fully open flowers, primarily observed in the filaments and anthers. {ECO:0000269|PubMed:20706774}. |
| Uniprot | TISSUE SPECIFICITY: Mainly expressed in the filaments of flowers, the shoot apex regions and pollen. Also present in leaves. {ECO:0000269|PubMed:20706774}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015035 | 5e-88 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
