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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G026100.3.p | ||||||||
Common Name | GLYMA_06G026100, LOC100809369 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 338aa MW: 37455.4 Da PI: 9.8626 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 401.3 | 1.3e-122 | 1 | 337 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg..yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkll 82 mdd g+re r+k+ +y++a + l +++ +q+m++iaerda+i+ernla+sekkaa+aerdma++qrd+a+aern+a++erdn+++ Glyma.06G026100.3.p 1 MDDAGHREngRHKAadQYKSAqgQWLMQHQpsMKQIMAMIAERDAAIQERNLAISEKKAAYAERDMAYMQRDAAIAERNNAMLERDNAIA 90 99****9999999889999555544444432145******************************************************** PP GAGA_bind 83 alllvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakk 166 +l+++e+sl+ ++p+g+q+++g+k++++ qq +++ p+++d ++++re++++e+lp ++e+ ++ +rak+pke+k+ Glyma.06G026100.3.p 91 TLQYRETSLSsgsmPSCPPGCQISRGVKHVHHPQQqVHHiPNMGDASYNTREMHTTEVLPAAPIPSETGKS------RRAKRPKEPKSAP 174 ********99888889*****************9955669*****************99955544444333......4667888888998 PP GAGA_bind 167 kkkksekskkkvkkesader............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnG 228 ++kk++k+ kkvkkes+d + ska++k +dl+ln+v++Dest+P+PvCsCtG+lrqCYkWGnG Glyma.06G026100.3.p 175 PNKKTSKPSKKVKKESEDLNnmfgkahewksgqemvnggddlnkqlavSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLRQCYKWGNG 264 999999999999999999555999999*************************************************************** PP GAGA_bind 229 GWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 GWqSaCCttt+S+yPLP+++++r+aR++grKmS++af+klL++Laae +dlsnpvDLkdhWAkHGtn+++ti+ Glyma.06G026100.3.p 265 GWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAESHDLSNPVDLKDHWAKHGTNRYITIK 337 ************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 4.4E-106 | 1 | 337 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 5.2E-173 | 1 | 337 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MDDAGHRENG RHKAADQYKS AQGQWLMQHQ PSMKQIMAMI AERDAAIQER NLAISEKKAA 60 YAERDMAYMQ RDAAIAERNN AMLERDNAIA TLQYRETSLS SGSMPSCPPG CQISRGVKHV 120 HHPQQQVHHI PNMGDASYNT REMHTTEVLP AAPIPSETGK SRRAKRPKEP KSAPPNKKTS 180 KPSKKVKKES EDLNNMFGKA HEWKSGQEMV NGGDDLNKQL AVSKADWKGQ DLGLNQVAYD 240 ESTMPAPVCS CTGVLRQCYK WGNGGWQSAC CTTTLSMYPL PAVPNKRHAR VGGRKMSGSA 300 FNKLLSRLAA ESHDLSNPVD LKDHWAKHGT NRYITIK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.43035 | 0.0 | cotyledon| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G026100.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093610 | 0.0 | BT093610.1 Soybean clone JCVI-FLGm-24C8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006581036.1 | 0.0 | uncharacterized protein LOC100809369 isoform X1 | ||||
Refseq | XP_006581037.1 | 0.0 | uncharacterized protein LOC100809369 isoform X1 | ||||
Refseq | XP_006581039.1 | 0.0 | uncharacterized protein LOC100809369 isoform X1 | ||||
Refseq | XP_006581040.1 | 0.0 | uncharacterized protein LOC100809369 isoform X1 | ||||
Refseq | XP_006581042.1 | 0.0 | uncharacterized protein LOC100809369 isoform X1 | ||||
Refseq | XP_025984487.1 | 0.0 | uncharacterized protein LOC100809369 isoform X1 | ||||
Refseq | XP_028234720.1 | 0.0 | protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_028234721.1 | 0.0 | protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_028234722.1 | 0.0 | protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_028234723.1 | 0.0 | protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_028234724.1 | 0.0 | protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_028234725.1 | 0.0 | protein BASIC PENTACYSTEINE6-like | ||||
Swissprot | Q8L999 | 1e-153 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | A0A0B2PNG6 | 0.0 | A0A0B2PNG6_GLYSO; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | I1K7L4 | 0.0 | I1K7L4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G02880.4 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-138 | basic pentacysteine 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G026100.3.p |
Entrez Gene | 100809369 |