PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G017800.4.p
Common NameGLYMA_06G017800, LOC100785135
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Nin-like
Protein Properties Length: 911aa    MW: 101404 Da    PI: 5.7251
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G017800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.23.8e-29594645152
               RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++
  Glyma.06G017800.4.p 594 AEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKV 645
                          589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.450.406.7E-4205298IPR029016GAF domain-like
PROSITE profilePS5151917.837582665IPR003035RWP-RK domain
PfamPF020426.4E-25597645IPR003035RWP-RK domain
SMARTSM006662.9E-22816899IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2404.0E-21816896No hitNo description
SuperFamilySSF542777.61E-22816901No hitNo description
PROSITE profilePS5174525.565816899IPR000270PB1 domain
CDDcd064078.41E-40817898No hitNo description
PfamPF005641.0E-17817898IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 911 aa     Download sequence    Send to blast
MMGDGGVISS AATMMEAPPP DGTTTTSMDF DYMGELFLDG CWMEASADGS DFLLQSPSFS  60
NTLFDPSFSW PALETNHNES QVAAFGSQQE SHNNNMVSVV AGGDYSQQFQ SETHSVEGAS  120
EGIRRWWFAP THTPTPSPGP GPSIMEKLIR ALMWIKDYNR NKDMLIQIWV PVHKEGRPIL  180
AADDLLFSLE SKSLNLAKYR EISVTYKFSA EESDSKELAW GLPGRVFRDK VPEWTPDVRF  240
FKIDEYPRVD HAQEYDVRGT LAVPIFEQGS KTCLGVIEVV MTTQQINYGP ELESVCKALE  300
AVDLRSSKQL SIQNVKQACN RSYEAALPEI HEVLRSACEM HKLPLAQTWV PCVQQGKEGC  360
RHSEDNYLLC ISPVEHACYV GDPSIRSFHE ACTEHHLLKG EGVAGGAFMT NQPCFSDDIT  420
SLSKKDYPMS HHARLFGLRA AVAIRLRSIY NSTDDFVLEF FLPVDCNDIE EQRKMLTSLS  480
NIIQRVCRSL RVIREKELEE ANLSVNEVIA LADSGFTRDE ICSEPQQKGM VASLDTEEKS  540
SETMGRKFSE PRQQQESPIL KGNLDCVREC STSVEGNLSS PGTSKTGERR RVKAEKTITL  600
QVLRQYFAGS LKDAAKNIGV CTTTLKRICR QHGIKRWPSR KIKKVGHSLQ KLQLVIDSVQ  660
GASGAFQINS FYSNFPDLAS PNLSGTGFFS TLNQSDNPNS TSTQPEHGSL SPEGASKSPS  720
SSSSQSSISS HSCSSMSELQ QQHTTNIASD KDPATVGEYS ADVVLKLIRN EAKLKSLSQD  780
RAKLLPRSLS QETLGEHPKT QYQLPLLKTS SSKVDSHRVK VTYGDEKTRF RMLKNWVYED  840
LLQEIGRKFN VSDMSKFDVK YLDDDCEWIL LTCDADLEEC IDVCQSSESG TIKLSLQPSS  900
HSVRSSLEFR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.621420.0cotyledon| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G017800.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527641.20.0protein NLP4 isoform X1
RefseqXP_006581138.10.0protein NLP4 isoform X1
RefseqXP_028234624.10.0protein NLP4-like isoform X1
RefseqXP_028234625.10.0protein NLP4-like isoform X1
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLK7KSI90.0K7KSI9_SOYBN; Uncharacterized protein
STRINGGLYMA06G02030.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein