PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.06G012200.1.p | ||||||||
Common Name | GLYMA_06G012200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 391aa MW: 43071.1 Da PI: 7.4163 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.7 | 2.3e-09 | 195 | 242 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Glyma.06G012200.1.p 195 SHSLAERVRREKISERMKYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 242 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.19E-17 | 189 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.70E-10 | 189 | 246 | No hit | No description |
PROSITE profile | PS50888 | 15.624 | 191 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-17 | 191 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-6 | 195 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.1E-10 | 197 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 391 aa Download sequence Send to blast |
MLHCANTSGN LAVAGDMTVL ERQRARMKWQ EEQGYFSGNS FNGVFSSSSL HVHDSIMVAA 60 DSGCALAEVV AQAQARSTNS SSISRTFSCP PALVEPESES KPKPKPTDSS VGKDGFKKRK 120 PDKPHHPKVV AENDNKDKRI KFGSDDGESK ITKSNTTNTN TNNNKETCAE TSNSKASEKP 180 DYIHVRARRG QATDSHSLAE RVRREKISER MKYLQDLVPG CNKVTGKAGM LDEIINYVQS 240 LQRQVEFLSM KLAAVNPRLD LSIDDLFDKD VFSTCATNFP NIGISSTSDI SNPAYLQFNS 300 PQQIFSYDGL DPSDMGLRRT ISAPVSMPET YLQSSCFTQM LPSSTWEGDF QNLCNFDFDQ 360 ARATSFPSQL LSGNYKSVPC RTTFFLSLLS * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.51761 | 0.0 | cotyledon| hypocotyl| leaf| stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.06G012200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT098235 | 0.0 | BT098235.1 Soybean clone JCVI-FLGm-26H15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527205.1 | 0.0 | transcription factor bHLH63 | ||||
Refseq | XP_028234560.1 | 0.0 | transcription factor bHLH63-like | ||||
TrEMBL | A0A445K344 | 0.0 | A0A445K344_GLYSO; Transcription factor bHLH63 isoform A | ||||
TrEMBL | I1K769 | 0.0 | I1K769_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G01430.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3618 | 34 | 63 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34530.1 | 6e-58 | cryptochrome-interacting basic-helix-loop-helix 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.06G012200.1.p |