PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G009500.2.p
Common NameGLYMA_06G009500, LOC100816667
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 557aa    MW: 61882.1 Da    PI: 6.6403
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G009500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-094214581954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Glyma.06G009500.2.p 421 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 458
                          554459******************************88 PP
2BELL122.81.4e-39284355172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          e+q+l+ k +kLls+l+eVd+rYkqy++q+q+v+ssF++vag+g+akpYt+lAl++iS hFrcL+dai++qi
  Glyma.06G009500.2.p 284 EKQDLHHKLTKLLSMLDEVDNRYKQYYQQMQIVVSSFDVVAGCGAAKPYTALALQTISCHFRCLRDAITGQI 355
                          6799*******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-50202353IPR006563POX domain
PfamPF075269.9E-47210352IPR006563POX domain
PROSITE profilePS5007111.953399462IPR001356Homeobox domain
SMARTSM003891.5E-9402466IPR001356Homeobox domain
CDDcd000863.40E-12402463No hitNo description
SuperFamilySSF466891.88E-17403469IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-28405468IPR009057Homeodomain-like
PfamPF059202.1E-18419458IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MATYYTSSSN ERDAVPMLCL REPLPDSYPE TPILPSNMSL YMNSGSYSEA LSGNSQPQNN  60
CFVIPSPSVG ASHSTPEQQE ILANIGGFQT GVHDFSAWRE GRSEMLVRQT MDGQNLQGQG  120
LSLSLGTHIP SGIQMPSIHD RNHRPSFDSF LGTNPSSSGN EAAYQKGSSR DEGMRHSENL  180
PPGLPEANQD LDKADFSIHR MSSVGRTVPS FKYLKAVQLL LDEVVDIRKA IKRPVVRSYS  240
THENSKKNSN EDDEQLENDR PSANGVPNSQ ASTSKTSCEL SHAEKQDLHH KLTKLLSMLD  300
EVDNRYKQYY QQMQIVVSSF DVVAGCGAAK PYTALALQTI SCHFRCLRDA ITGQISATQK  360
NLGEQNASGS NKGVGMTRLK YMDQQIRQQR VLQQLGMMQH AWRPQRGLPE SSVVILRAWL  420
FEHFLHPYPK DSDKIMLAKQ TGLTRSQVSN WFINARVRLW KPMIEEMYKQ ENCDADMDSS  480
SSSENVSKVT KSDVKTSNDM GDDWQHCQSP IVADTNHIGG QAKDLRHDQA LDTEIMSSTG  540
LASLINGVRG VETEHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-16408466563Homeobox protein Meis2
3k2a_B7e-16408466563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.610730.0hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G009500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581113.10.0BEL1-like homeodomain protein 7
RefseqXP_028234538.10.0BEL1-like homeodomain protein 7
TrEMBLA0A445K2Z20.0A0A445K2Z2_GLYSO; BEL1-like homeodomain protein 6 isoform A
TrEMBLK7KSE70.0K7KSE7_SOYBN; Uncharacterized protein
STRINGGLYMA06G01186.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-112BEL1-like homeodomain 6