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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.06G003800.1.p |
Common Name | GLYMA_06G003800, MYB48 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MYB |
Protein Properties |
Length: 236aa MW: 26607.4 Da PI: 9.1933 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.06G003800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52.4 | 1.3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl
Glyma.06G003800.1.p 14 KGAWTKEEDHRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
79******************************99************97 PP
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2 | Myb_DNA-binding | 55.8 | 1.1e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+++ eEd+l+++++ +lG++ W++Ia +++ gRt++++k++w+++
Glyma.06G003800.1.p 67 RGNFSLEEDQLIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 236 aa
Download sequence Send
to blast |
MGRSPCCEKA HTNKGAWTKE EDHRLISYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF SLEEDQLIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLSRG 120 IDPATHRPLN DSSHQEPAAV SAPPKHQESF HHERCPDLNL ELTISPPHHP QPDHPHLKTL 180 VTNSNLCFPC SLGLHNSKDC SCALHTSTAN ATATGYDFLA LKTTVVLDYR TLHMK*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. {ECO:0000305}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FJ555057 | 0.0 | FJ555057.1 Glycine max transcription factor MYB047 mRNA, complete cds. |