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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G002400.1.p | ||||||||
Common Name | GLYMA_06G002400, LOC100802811 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 855aa MW: 99006.2 Da PI: 8.0881 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77.4 | 2.8e-24 | 94 | 180 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA++vGF +++++s++sk++g++++ + Cs+ g+++e+ + ++r+ ++tgCka +++kk++dg+w ++++++eHnH ++ Glyma.06G002400.1.p 94 SFYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSKRESGTV----VNPRPCKKTGCKAGIHIKKKQDGNWIIYNFVKEHNHGIC 179 5****************************************998877....9***********************************998 PP FAR1 91 p 91 p Glyma.06G002400.1.p 180 P 180 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-21 | 94 | 180 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.4E-26 | 258 | 350 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.841 | 536 | 574 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.5E-8 | 549 | 576 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 2.7E-6 | 550 | 572 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 855 aa Download sequence Send to blast |
MEIDLELPIC EHEMLKSGSS GNDVTDTACD IYLEEQSINP SSMTEHSKKV LSENAFCCQD 60 QVDLNSNQVD AIDKFPFKEP QNGLEFESKE AAYSFYREYA RSVGFGITIK ASRRSKKSGK 120 FIDIKIACSR FGSKRESGTV VNPRPCKKTG CKAGIHIKKK QDGNWIIYNF VKEHNHGICP 180 DDFFRGSKQT SIVASQKKGM QLALEEGDVQ SMIEYFVSMQ CKNPNFFYAI DLDQNRHLRT 240 VFWVDSKGRL DYQNFHDIVL IDTFYLRNKY KIPFVPFVGV NHHFQYILLG CALVGEETVS 300 AFIWLMRAWL KAMSNLPPKV IITDQEQFLK EAVMEVFPDK RHCFCLSHIL CKITKNLDYI 360 IDQNNNFMGK FDKCIHHSCS DEQFEKRWWK LINRFELKND EWVQSLYEDR KKWVPTFMQD 420 ISLAGLSTTV RYESISSSFD KYICVDSTFK EFIEQYKVFS IDSFDMEAKA DFETKQKQPA 480 LRSLSPFEKQ LSTIYTDAIF RKFQLEILGM MSCHLQKETE KRANVTFLVD DFEEQKKFIV 540 SWKEADLYVS CSCCLFQYKG FLCRHAILVL QKSGITNIPS HYILKRWMKD AKANQFVGDV 600 ITRTAHRVQR FNDLCRQAII LSEIGSLSED TYRVASQALE EIYKHCVNAN NFARSTLESN 660 KLVLNGFDVE EKNDGCHRAK PTKKRKSFNK RECSDPERIN IKMLDDFQKR EQRNTRAHNF 720 DNCYISQQDI QTVDLDSRAS TLDVYYGAQR NVLGDSQLNS VSVMRDCYYG SQLAILGLVG 780 RMYFFLGSFF RDLYGSHFVS IFRGNCIPCQ AVVHIMKCST ACKDRFKDCS LSERQKLWNN 840 LLGTRSSMAL HQSN* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G002400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006581088.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2 isoform X1 | ||||
Swissprot | Q3EBQ3 | 0.0 | FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2 | ||||
TrEMBL | A0A0R0J9K4 | 0.0 | A0A0R0J9K4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G00461.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32250.4 | 0.0 | FAR1-related sequence 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G002400.1.p |
Entrez Gene | 100802811 |
Publications ? help Back to Top | |||
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