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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.05G248800.1.p |
Common Name | GLYMA_05G248800, LOC100796042 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
HD-ZIP |
Protein Properties |
Length: 714aa MW: 79304.9 Da PI: 6.8128 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.05G248800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 63.1 | 4.1e-20 | 21 | 76 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
r++ +++t++q+++Le++F+++++p++++r +L+++lgL rq+k+WFqNrR+++k
Glyma.05G248800.1.p 21 RKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 76
789999***********************************************998 PP
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2 | START | 170.8 | 9.2e-54 | 224 | 448 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
START 2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla.... 77
+a a++e++++++ +ep+W ks +s+ +d +k+ + ++ea+r+sgvv ++ lv ++d + +W + ++
Glyma.05G248800.1.p 224 IASNAMEEFLRLVQTNEPLWLKSNvdrrdvlSSDAYDRMFSKPNTRSKnpnVRIEASRDSGVVLLNSLALVDMFMDPN-KWIQLFPtivs 312
67899*******************9999777777777777777554338999**************************.99999999999 PP
EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
a t++vissg g lqlm++elq+lsplv+ R+f+f+Ry++q ++g+w+++dvS d +q+ ++ R+++ pSg+li+++++g
Glyma.05G248800.1.p 313 VARTIQVISSGvmgscsGSLQLMYQELQVLSPLVStREFYFLRYCQQIEQGTWAVMDVSYDFPQDSH-FAPQFRSHRCPSGCLIQDMPDG 401
*****************************************************************99.8********************* PP
EEEEEEEE-EE--SS.XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 161 hskvtwvehvdlkgr.lphwllrslvksglaegaktwvatlqrqcek 206
hsk+tw+ehv+ +++ lph l+r l+ sg+a+ga +w+ tlqr ce+
Glyma.05G248800.1.p 402 HSKITWIEHVEIEDKtLPHRLYRNLIYSGMAFGAERWLTTLQRMCER 448
************876267***************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 714 aa
Download sequence Send
to blast |
MEYGGSQSPG EQDGSDSQER RKRYHRHTAN QIQRLESMFK ECPHPDEKQR LQLSRELGLA 60 PRQIKFWFQN RRTQMKAQHE RADNCALRAD NDKIRCENIA IREALKNVIC PSCGGPPLND 120 DSYFNDHKLR LENAHLKEEL DRVSSIAAKY IGRPISQLPP VQPIHISSLD LSMASFGNQG 180 MVGPAPAPSL NLDLLPAGTS SSMPNLPYQP PCLSDMDKSL MSDIASNAME EFLRLVQTNE 240 PLWLKSNVDR RDVLSSDAYD RMFSKPNTRS KNPNVRIEAS RDSGVVLLNS LALVDMFMDP 300 NKWIQLFPTI VSVARTIQVI SSGVMGSCSG SLQLMYQELQ VLSPLVSTRE FYFLRYCQQI 360 EQGTWAVMDV SYDFPQDSHF APQFRSHRCP SGCLIQDMPD GHSKITWIEH VEIEDKTLPH 420 RLYRNLIYSG MAFGAERWLT TLQRMCERFT YLMATSNPTR DNLGGVISSP EGKRSMMKLA 480 QRMVTDFCAS ISTSSGHRWT TLSGLNEIVV RVTVHKSSDP GQPNGVVLSA ATTIWLPTPP 540 HTVFNFFKDE NKRPQWDVLS NGNAVQEVAN IANGLHPGNC ISVLRAFNNS QNMLILQESC 600 IDSYGSLVVY CPVDLPSINT AVSGEDPSYI PLLPNGFTIL PDGQPDQEGD GASTSSNTNR 660 NIARSGGSLV TIAFQILVSS LPSAKVNMES VTTVNNLIGS TVQQIKSSLS CPT*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: During embryo development, expressed in all cells at the 4- and 16-cell embryo stages. Expression is restricted to the protoderm from the globular stage onward. {ECO:0000269|PubMed:25564655}. |
Uniprot | TISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and petal epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015034 | 1e-126 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Khosla A, et al.
HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23. Plant Cell, 2014. 26(5): p. 2184-2200 [PMID:24824485] - Horstman A, et al.
AIL and HDG proteins act antagonistically to control cell proliferation. Development, 2015. 142(3): p. 454-64 [PMID:25564655] - Cai XT,Xu P,Wang Y,Xiang CB
Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis. J Integr Plant Biol, 2015. 57(12): p. 1017-30 [PMID:25752924] - Yu LH, et al.
Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field. Plant Biotechnol. J., 2016. 14(1): p. 72-84 [PMID:25879154] - Zhu Z, et al.
Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance. Front Plant Sci, 2016. 7: p. 1285 [PMID:27625663] - Liu Y, et al.
Overexpression of AtEDT1 promotes root elongation and affects medicinal secondary metabolite biosynthesis in roots of transgenic Salvia miltiorrhiza. Protoplasma, 2017. 254(4): p. 1617-1625 [PMID:27915455] - Ueda M, et al.
Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote. Genes Dev., 2017. 31(6): p. 617-627 [PMID:28404632] - Lung SC, et al.
Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621] - Zheng G, et al.
Over-Expression of Arabidopsis EDT1 Gene Confers Drought Tolerance in Alfalfa (Medicago sativa L.). Front Plant Sci, 2017. 8: p. 2125 [PMID:29326737]
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