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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G234500.1.p | ||||||||
Common Name | GLYMA_05G234500, LOC100810945 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 28077.8 Da PI: 5.239 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23 | 1.4e-07 | 137 | 184 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L+ ++P + k + a +L + ++Y++sLq Glyma.05G234500.1.p 137 SHSLAERVRRGKINEKLRCLQNIVPGC----YKTMGMAIMLDEIINYVQSLQ 184 8*************************8....355888999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.51E-9 | 131 | 188 | No hit | No description |
SuperFamily | SSF47459 | 7.33E-16 | 131 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.589 | 133 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.4E-16 | 133 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.7E-5 | 137 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-7 | 139 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MAEFTADLQS LRFPFLDIDN MEMQNLMMPF SCESFLGSPE AEFAGNLEEN FPDHNEVPVL 60 VPIINSVKNE IHEGQKRKAT DIWEPSSANS TPAVFESGSK TKNSCGRGKR VKRNMIEDKK 120 PNEVVHVRAK RGQATDSHSL AERVRRGKIN EKLRCLQNIV PGCYKTMGMA IMLDEIINYV 180 QSLQHQVEFL SMKLNAASTY YDFNSESDVL ETMQRARASE VKELDRYVRE ECEGVSCFEP 240 TWSWPL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.61189 | 0.0 | hypocotyl| meristem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G234500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT136059 | 1e-133 | BT136059.1 Lotus japonicus clone JCVI-FLLj-3K3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003525253.1 | 0.0 | transcription factor BEE 1-like | ||||
Refseq | XP_028231020.1 | 0.0 | transcription factor BEE 1-like | ||||
TrEMBL | A0A445KT75 | 0.0 | A0A445KT75_GLYSO; Transcription factor BEE 1 | ||||
TrEMBL | I1K5R2 | 0.0 | I1K5R2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G35060.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3360 | 34 | 67 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18400.1 | 1e-59 | BR enhanced expression 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G234500.1.p |
Entrez Gene | 100810945 |