PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G224400.1.p
Common NameGLYMA_05G224400, LOC100789199
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 354aa    MW: 39350 Da    PI: 7.4653
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G224400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07119139526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C++f++ G Ck Gd C +aHg
  Glyma.05G224400.1.p 119 ACPDFRK-GSCKKGDACEYAHG 139
                          7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-5114140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.497115141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5118141IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-6119139IPR000571Zinc finger, CCCH-type
SMARTSM0035614149172IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.559149173IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MMLGETHRPN PTVHVPPWAP EIFSPYTGNA DYSPYSMQEA LSALQHYEST DAESDSEVPS  60
REPEVPVDAY SCDHFRMFEF KVRRCARCRS HDWTDCPYAH PGEKARRRDP RKYHYSGTAC  120
PDFRKGSCKK GDACEYAHGV FECWLHPARY RTQPCKDGTS CRRRVCFFAH TPDQLRVLPQ  180
QSPRSADSYD GSPLRHAIES SCAKSHPFVA SPGSASSPVE SPPMSPMTVS VNEMVASLRN  240
LQLGKVKSLP SSWNVMGSSG FGSPRGPMIR PGFFSLPTTP TQAPTRGGVN YFDQWDQSCC  300
EEEPVMERVE SGRSIRARMF EKLSKENHLD GSGSGSSQIG VPDVGWVSEL VSR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.555830.0cotyledon| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G224400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5503080.0KC550308.1 Glycine max C3H-type zinc finger protein (C3H9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001341846.10.0C3H-type zinc finger protein
RefseqXP_028233788.10.0zinc finger CCCH domain-containing protein 20-like
SwissprotO821991e-127C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A445KS800.0A0A445KS80_GLYSO; Zinc finger CCCH domain-containing protein 20
TrEMBLI1K6180.0I1K618_SOYBN; Uncharacterized protein
STRINGGLYMA05G36110.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-128C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]