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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G221300.3.p | ||||||||
Common Name | GLYMA_05G221300, LOC100803302 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 1091aa MW: 119682 Da PI: 6.2562 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.2 | 1.2e-21 | 132 | 233 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae++ +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ F ++L +gD+v+F Glyma.05G221300.3.p 132 FCKQLTASDTSTHGGFSVPRRAAEKIfppldysV-QPP-AQELVARDLHDNVWRFRHIYRGQPKRHLLTTGWSLFIGGKRLLAGDSVLFV 219 99*****************************843.333.359************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++++l+++++r+ Glyma.05G221300.3.p 220 --RDEKQQLLLGIRRA 233 ..5688889****997 PP | |||||||
2 | Auxin_resp | 117.1 | 1.5e-38 | 258 | 341 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aa+a++++s+F+v+YnPras+seFv++++k++ka++ +++s+GmRf+m+feteds +rr++Gt++gvsdld+vrW+nS Wr+L+ Glyma.05G221300.3.p 258 AAQAVANNSPFTVFYNPRASPSEFVIPLAKYSKAVYsHHISPGMRFRMMFETEDSGTRRYMGTIIGVSDLDSVRWKNSLWRNLQ 341 789********************************9899*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.03E-42 | 121 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-39 | 123 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.33E-17 | 131 | 223 | No hit | No description |
SMART | SM01019 | 7.0E-21 | 132 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-19 | 132 | 233 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.533 | 132 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.6E-34 | 258 | 341 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 24.346 | 978 | 1062 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 9.12E-6 | 997 | 1056 | No hit | No description |
Pfam | PF02309 | 2.4E-6 | 1021 | 1063 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1091 aa Download sequence Send to blast |
MKAQPPDGAA AVAPNAGEGG EKKTINAELW QACAGPLLNL PSPGTHVVYF PQGHSEQVAA 60 SLKKDVDAQV PNYTNLPSKI PCLLHNVTLH ADPDTDEVYA QMTLQPVPSF DTDALLRSDI 120 FLRSSKPQPE FFCKQLTASD TSTHGGFSVP RRAAEKIFPP LDYSVQPPAQ ELVARDLHDN 180 VWRFRHIYRG QPKRHLLTTG WSLFIGGKRL LAGDSVLFVR DEKQQLLLGI RRANRQPSNL 240 SSSVLSSDSM HIGVLAAAAQ AVANNSPFTV FYNPRASPSE FVIPLAKYSK AVYSHHISPG 300 MRFRMMFETE DSGTRRYMGT IIGVSDLDSV RWKNSLWRNL QVGWDESTAE ERQSRVSVWE 360 IEPVTTPYFI CPPPFFRSKI PRLLGMPDDE PDFNNLFKST VPWLGDDMCV KGPQALPGLS 420 LVQWMNIQQN PALASSLQPN CGPSMSGLVL QNLPGADIAN PLGFSTSQIS QSNNVSVDAQ 480 NILQTSQQLD HIQKPPCPSS ALGAVTQPLQ QLGDITQQPR NLTNQTLPHD QAHTQLLNPQ 540 RVVQTNNIHQ QQQSSIQKQQ LLRSLSQNRA QKHQQTTLGL NERQIVFQSP MPDHFNQQLQ 600 MSDNQVRFQL LQKLQQQQQT LLAQQSALQQ PALIQIQDQQ RQLLDVANNS SSPIPGQVLE 660 NLPTLQNSLP EANSITHQIT MPSSQKNFHY SHLSQQPALL SEMSGHVGLP PTVTTNPLSA 720 SGGSILTGVG QSVITDDVPS CSTSPSTNNR ASVLPPVVSS QIHRSTTIGD DMAQSAVTIS 780 GASTLETMSS NANIVQPKYE VKASLNISKN QNQGNVAPQT YLNGVVQTDY LDSSSSTTSL 840 YHFRSDTHMH QNTNPFSYNP QLVYCRDNSQ NVEVQADARN NVLIGNNVNG QMGMPSNLDS 900 LLTKGTVGLG KELSNKFASG GLLRDLENNK GVPPEISSSM VSQTFEVPDM SFNSIDSTID 960 GSSFLNRGPW DLPPPPPPQQ QQVYKRGAVG RSIDITRYSG YEDLKQDLAL RFGIEGQLED 1020 LQRIGWKLVY VDHENDVLLV GDDPWEEFVN CVRCIKILSP QEVQQMSLDG DFGNGGLPYP 1080 AGSSSDGGNA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-165 | 19 | 362 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G221300.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235342 | 0.0 | AC235342.1 Glycine max strain Williams 82 clone GM_WBb0088H14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006580494.1 | 0.0 | auxin response factor 19-like isoform X2 | ||||
Refseq | XP_028233752.1 | 0.0 | auxin response factor 19-like isoform X2 | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A0R0K7D4 | 0.0 | A0A0R0K7D4_SOYBN; Auxin response factor | ||||
TrEMBL | A0A445KSW0 | 0.0 | A0A445KSW0_GLYSO; Auxin response factor | ||||
STRING | GLYMA05G36430.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G221300.3.p |
Entrez Gene | 100803302 |