PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G214400.1.p
Common NameGLYMA_05G214400, LOC100813992
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 335aa    MW: 37202.2 Da    PI: 5.0571
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G214400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19107158156
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g+
  Glyma.05G214400.1.p 107 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAIVYDNAAIQLRGA 158
                          59********.**********72....45*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.28E-31107164No hitNo description
SMARTSM003801.0E-35108171IPR001471AP2/ERF domain
PROSITE profilePS5103223.064108165IPR001471AP2/ERF domain
PfamPF008477.7E-12108157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-29108165IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-21108165IPR016177DNA-binding domain
PRINTSPR003675.6E-10109120IPR001471AP2/ERF domain
PRINTSPR003675.6E-10131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MASSSIKNTH HLNRTKLFME EDTLLKKKRH YPKLIRIRVT DADATDSSSD DDEPSVSSTR  60
RRVKYFVNEI TIQGGGGGGG CVNVVSRKRR FKAGAGAPSC RRRTGAKKFR GVRQRPWGKW  120
AAEIRDPLRR VRLWLGTYDT AEEAAIVYDN AAIQLRGADA LTNFVTPPRE NRKTGYCSGE  180
ESRNNDLRSP TSVLGCRSVY EEAESVTANA TGNDVVDESV TVVANDVVGP SSECEYSCVS  240
EDSNNDKLKP ESVFPIPNDV VFDFQSTLDM FDEGINTNNN NNVAESSIFL AEDFDFKGSF  300
VNENLDLGFT SWHRECDNFQ DIGDLFVWDP LVAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20107164159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.278160.0leaf| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G214400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8730890.0EU873089.1 Glycine max cytokinin response factor 2 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580543.10.0ethylene-responsive transcription factor CRF2-like
RefseqXP_028233652.10.0ethylene-responsive transcription factor CRF2-like
TrEMBLA0A445KSJ20.0A0A445KSJ2_GLYSO; Ethylene-responsive transcription factor CRF2
TrEMBLI1K6B50.0I1K6B5_SOYBN; Uncharacterized protein
STRINGGLYMA05G37120.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.27e-48cytokinin response factor 2