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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G211200.1.p | ||||||||
Common Name | GLYMA_05G211200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 321aa MW: 36142.4 Da PI: 6.1007 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W ++++ g+ R++k+c++rw +yl Glyma.05G211200.1.p 14 RGLWSPEEDEKLIRYITTHGYGCWGEVPEKAGLLRCGKSCRLRWINYL 61 788*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.1e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE++l++ ++ G++ W+ Ia++++ gRt++++k++w+++ Glyma.05G211200.1.p 67 RGRFTPEEEKLIITLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89********************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.241 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.04E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.76E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.592 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.08E-12 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWGEV PEKAGLLRCG KSCRLRWINY 60 LRPDIRRGRF TPEEEKLIIT LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKTS 120 VSSTTIAQSI DHNSSHQFNY NSNLVLDHFP NQDNNLQTKP PVQEALFSST CPLFIFDTTD 180 SLEPGTATDC KSSTVRAEHF HQDAVGLSSE TWNSSHHQVH ALPPLTVSVG LDTSNYLPPL 240 IEHVDNMVPI EVQSCTIDEQ GDIALECLQR QGLNEWVETQ QQCPNFLFWD SVEGQLGGEE 300 LAPNSSNVEA NTLSPFPCSL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.38354 | 1e-123 | pod |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G211200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014630781.1 | 0.0 | plectin/S10 domain-containing protein isoform X1 | ||||
Refseq | XP_028230892.1 | 0.0 | uncharacterized protein LOC114411400 | ||||
TrEMBL | A0A445KS22 | 0.0 | A0A445KS22_GLYSO; Transcription factor MYB86 | ||||
TrEMBL | I1K6E6 | 0.0 | I1K6E6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G37460.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4112 | 33 | 58 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63910.1 | 1e-100 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G211200.1.p |