PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G210600.2.p
Common NameGLYMA_05G210600, LOC100787434
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 475aa    MW: 53304.9 Da    PI: 9.106
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G210600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.53.9e-12338363126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          y   +C+++ +tG+C yGd+CkF+H+
  Glyma.05G210600.2.p 338 YQPDICKDYKETGYCGYGDSCKFMHD 363
                          66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.27E-9336368IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7337364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878337365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-12338368IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-10338363IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.105.2E-13402455IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.2E-12413456No hitNo description
PfamPF139207.6E-9413454No hitNo description
SMARTSM001841.8E-4414451IPR001841Zinc finger, RING-type
CDDcd001626.93E-8414455No hitNo description
PROSITE profilePS5008910.439414452IPR001841Zinc finger, RING-type
PROSITE patternPS005180429438IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034247Biological ProcesssnoRNA splicing
GO:0045292Biological ProcessmRNA cis splicing, via spliceosome
GO:0005684Cellular ComponentU2-type spliceosomal complex
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MNNPVRRHAP AAAVVANRST FTGTKSLPKR GQIKSKIVAG ICWTRGPRPN ILETEKKNII  60
PEEPDPIPIS KQSHTPPLLQ NGDQVWSAAA RGRLESVRHG GFRLGFSVAA PKRSNRDSKT  120
QRDRGLRRAS APAAIYYCGC INILVMEDSD QPAKSAENQQ TEQVCSFFRK PVNKKNIRKR  180
TIVNEDNEED SNNETSLLHI QKKTLKPDNK LYFSTGSSKS SASAEPSEEP GKPVFQFESS  240
KEIQVQHDSK ATATLETETE FSKDARAIRE RALKQAEESL KGKSPSSKNE KLYKGMNSYK  300
DYKAGFRREQ TIASEKAGGS HGPLRASAHI RVSARFDYQP DICKDYKETG YCGYGDSCKF  360
MHDRGDYKSG WQMEKEWEEA EKARKMRLAA GEDADEEGAN LTDEDDEDSL PFACFICRNT  420
FVDPVVTKCK HYFCEHCALK HHAKNKKCFV CNQPTLGIFN VAHEIRRKMA EDKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-64248469113317RING finger protein 113A
5z58_M3e-64248469113317RING finger protein 113A
6ff4_t3e-64248469113317RING finger protein 113A
6ff7_t3e-64248469113317RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.576110.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G210600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5877030.0KM587703.1 Glycine max clone GmC3H6 C3H zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580554.10.0zinc finger CCCH domain-containing protein 1-like isoform X2
RefseqXP_028233604.10.0zinc finger CCCH domain-containing protein 1-like isoform X2
SwissprotQ8GX841e-162C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A445KRK20.0A0A445KRK2_GLYSO; Zinc finger CCCH domain-containing protein 1 isoform B
TrEMBLK7KS050.0K7KS05_SOYBN; Uncharacterized protein
STRINGGLYMA05G37521.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-143C3H family protein