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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G201900.3.p | ||||||||
Common Name | GLYMA_05G201900, LOC100813103 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 318aa MW: 35583.3 Da PI: 9.6892 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 332.5 | 1.2e-101 | 1 | 317 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdaki..rernlalsekkaavaerdmaflqrdkalaer 70 mdd ++e r+k yy+ ++ ++l +++++ s++aer+a+i e ++a+sek++a+a+rd a qrd+ala+r Glyma.05G201900.3.p 1 MDDGRQHEngRHKMeYYRgahslwntdsqhqvKEpNALV--MNKKIRSIMAERQAAIleIELEAAISEKNEALAARDAAIRQRDEALAQR 88 677666555899988999999999999877663335666..99**************76677889************************* PP GAGA_bind 71 nkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpk 160 ++al+erdn+l+al+ ++ns + p+g ++ g+k ++++ + + +++++ a++++++ + +a p++ ++ea +++++k+++++k+ Glyma.05G201900.3.p 89 DNALLERDNALAALQSRNNS--VNFPFGGGIQCGSKRMHHSSN-HLSNMTEAAYNTKDMIIRDASPVTVIPSEAVNSHQSKRSKENKVIN 175 ****************9998..66799999999******8887.669*******************999999998888888777776655 PP GAGA_bind 161 ekkak...kkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247 +k +k k+kk +e+ +++ ++e+ ++ ++e++ +d+++n v++De+ + vPvC+CtG++rqCYkWGnGGWqS+CCttt+S+yPLP+ Glyma.05G201900.3.p 176 SKASKppcKVKKMGEDLNRQASSEG--TKIRSEWDRQDVGVNLVAFDETIMLVPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSMYPLPQL 263 5555544688888888877777777..67************************************************************* PP GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +++r+aRi+grKmS+++f++lL++L +eG+dls p+DLk++WA+HGtn+++ti+ Glyma.05G201900.3.p 264 PNKRHARIGGRKMSGSVFTRLLSRLVSEGHDLSIPLDLKEYWARHGTNRYITIK 317 *****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 3.0E-135 | 1 | 317 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.4E-95 | 1 | 317 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDDGRQHENG RHKMEYYRGA HSLWNTDSQH QVKEPNALVM NKKIRSIMAE RQAAILEIEL 60 EAAISEKNEA LAARDAAIRQ RDEALAQRDN ALLERDNALA ALQSRNNSVN FPFGGGIQCG 120 SKRMHHSSNH LSNMTEAAYN TKDMIIRDAS PVTVIPSEAV NSHQSKRSKE NKVINSKASK 180 PPCKVKKMGE DLNRQASSEG TKIRSEWDRQ DVGVNLVAFD ETIMLVPVCT CTGVPRQCYK 240 WGNGGWQSSC CTTTLSMYPL PQLPNKRHAR IGGRKMSGSV FTRLLSRLVS EGHDLSIPLD 300 LKEYWARHGT NRYITIK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.9583 | 0.0 | cotyledon| root| somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G201900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003525427.1 | 0.0 | protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_003525429.1 | 0.0 | protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_006580620.1 | 0.0 | protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_028233459.1 | 0.0 | protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_028233460.1 | 0.0 | protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_028233461.1 | 0.0 | protein BASIC PENTACYSTEINE4-like | ||||
Swissprot | Q8S8C6 | 1e-125 | BPC4_ARATH; Protein BASIC PENTACYSTEINE4 | ||||
TrEMBL | A0A0B2QBP8 | 0.0 | A0A0B2QBP8_GLYSO; Protein BASIC PENTACYSTEINE4 | ||||
TrEMBL | I1K6R5 | 0.0 | I1K6R5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G38430.5 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21240.2 | 1e-122 | basic pentacysteine 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G201900.3.p |
Entrez Gene | 100813103 |