PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G200400.1.p
Common NameGLYMA_05G200400, LOC100793052
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 374aa    MW: 42043.5 Da    PI: 5.1758
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G200400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.71.7e-1953137177
             trihelix   1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                          rWt+qe+l+Lie ++ +e+  +  +        +  p+W+ vs+ +++rg++r+++qC+++w nl ++++kik++e++ ++ +s+
  Glyma.05G200400.1.p  53 RWTRQETLVLIESKKMVENGEQVCRfrsasgcvQTDPKWDMVSSLCQQRGVKRGAVQCRKRWGNLLTDFRKIKKWESGVKEVESE 137
                          8**************8888766322223456789*******************************************97544433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-450120IPR009057Homeodomain-like
PfamPF138372.4E-1152140No hitNo description
PROSITE profilePS500906.58653118IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAQDSEKICE GASESPTTPV GTQAPAPAPA PAPPESEPKS TSTQRIKATR HPRWTRQETL  60
VLIESKKMVE NGEQVCRFRS ASGCVQTDPK WDMVSSLCQQ RGVKRGAVQC RKRWGNLLTD  120
FRKIKKWESG VKEVESESFW IMRNDVRKEK KLPGFFDSVV YNVLDGGVCT TVAFPLTLVK  180
MVPKGENGVV VEGVSHHQEQ CKENEEEEEE EEEEEEEDEA IVDAEKMGWS TEEENMETNI  240
NGFLKTPTGL LIKEKGIAGR LKRTPILTLP TPEKLQQQPS YQGNYDPGFQ KEPMFQEGYK  300
RKRLPLDSSE DCTDFNSNIT NLLRRNSDML KAHLGAQNIN YQLARDQQKQ QTDIIVAALG  360
KLTDALTKIA DKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G200400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354310.0AC235431.1 Glycine max strain Williams 82 clone GM_WBb0144O21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524481.10.0trihelix transcription factor ASR3-like
RefseqXP_028233429.10.0trihelix transcription factor ASR3-like
TrEMBLA0A0B2QBN40.0A0A0B2QBN4_GLYSO; Trihelix transcription factor ASR3
TrEMBLK7KS830.0K7KS83_SOYBN; Uncharacterized protein
STRINGGLYMA05G38580.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-49Trihelix family protein