PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G189200.1.p
Common NameGLYMA_05G189200, LOC100780658
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 317aa    MW: 34689.6 Da    PI: 9.4193
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G189200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07259302445
                          S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                          W+  Ed  l++a k ++++   +W+++a+ ++ gR+   c  r+ 
  Glyma.05G189200.1.p 259 WSSAEDIALLNALKAFPKEvsmRWEKVAAAVP-GRSKAACMKRFA 302
                          ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.026168221IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-5170209IPR009057Homeodomain-like
PROSITE profilePS500905.064172205IPR017877Myb-like domain
PROSITE profilePS500907.526251305IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.4E-7253304IPR009057Homeodomain-like
SuperFamilySSF466891.33E-10255305IPR009057Homeodomain-like
SMARTSM007174.9E-5255307IPR001005SANT/Myb domain
PfamPF002498.5E-7259303IPR001005SANT/Myb domain
CDDcd001671.78E-6259305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MFVGVSVSSV CERMEFLDED ARPRFVFQSG AAARSSEPPH PIHKPTKPFL FATVSLSSLF  60
LTLSLFFLEA EPFKSLLFWL ALSLLVGPFA PPSITGGDVR VGRGEVVNFP DPEPEPDEDA  120
SRKSSQRRSR QRRAEEASAA VGPVVSVSAA EKRKESSGIE KRATVVEEEK GWSEEDVEVL  180
KKQMVKNPVG KPGRWEAIAA AFGGRHGVDS VIKKAKELGE KRVDDSESYA LFLKKRKALD  240
KRVVEENADE GEKVVDNGWS SAEDIALLNA LKAFPKEVSM RWEKVAAAVP GRSKAACMKR  300
FAELKKGFRT AKAAAE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.15030.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G189200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525111.20.0transcription factor MAMYB
SwissprotQ9ASQ24e-82MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A0R0K5W00.0A0A0R0K5W0_SOYBN; Uncharacterized protein
STRINGGLYMA05G32270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106861418
Representative plantOGRP81421212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.14e-63MYB_related family protein