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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G177700.1.p | ||||||||
Common Name | GLYMA_05G177700, LOC100798348 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 328aa MW: 36246.1 Da PI: 8.0269 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.9 | 4.4e-07 | 119 | 140 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ Cgk F+r nL+ H+r H Glyma.05G177700.1.p 119 FCEVCGKGFTRDANLRMHMRAH 140 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.32E-6 | 116 | 144 | No hit | No description |
PROSITE profile | PS50157 | 12.508 | 118 | 145 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0018 | 118 | 140 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 7.4E-4 | 119 | 138 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.3E-7 | 120 | 143 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 120 | 140 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 31 | 165 | 198 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 300 | 203 | 224 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MPNTTEEFHN NNCFESLHVS LRNLSQLSTR MDSLQSFLSH SIQSHTLLTH HQMSTVSNEI 60 LTAIRHVITN SAALVAASGN VLPLSETPTL DSPNLNNNNS NDNVVELDAM ELLAKHLHFC 120 EVCGKGFTRD ANLRMHMRAH GDEFKTPEAL ANKARGETRL KAARFSCPLE GCNRNKTHKK 180 FRPLKSVFCL RNHFKRSHCP KTLSCQRCRK KSFAVLSDLR SHVKQCRGEA TWKCSCGTTF 240 SRKDKLLGHV ALFEGHSPML EEEAPVAVAV KESEGGLDGL PEGFFDGLDE FGFGSIQNNC 300 SHAGASLALG LPSNNLYAWE LSFSNLI* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G177700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003524261.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like | ||||
Refseq | XP_028233111.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like | ||||
Swissprot | Q0WT24 | 4e-67 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
Swissprot | Q943I6 | 1e-65 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A445KQF4 | 0.0 | A0A445KQF4_GLYSO; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | K7KQX4 | 0.0 | K7KQX4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G31130.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6855 | 31 | 50 | Representative plant | OGRP830 | 16 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 9e-67 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G177700.1.p |
Entrez Gene | 100798348 |
Publications ? help Back to Top | |||
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